update dev html

Author: jrobinso

dev/alignment/bam.html

@@ -16,36 +16,19 @@
 
     const config =
         {
-            genome: "hg19",
-            locus:
-                [
-                    "chr1:155,153,822-155,155,105"
-                ],
-            tracks:
-                [
-                    {
-                        type: "alignment",
-                        url: "https://1000genomes.s3.amazonaws.com/phase3/data/NA19625/exome_alignment/NA19625.mapped.ILLUMINA.bwa.ASW.exome.20120522.bam",
-                        indexURL: "https://1000genomes.s3.amazonaws.com/phase3/data/NA19625/exome_alignment/NA19625.mapped.ILLUMINA.bwa.ASW.exome.20120522.bam.bai",
-                        name: "NA12878n"
-                    },
-                    {
-                        type: "alignment",
-                        url: "https://1000genomes.s3.amazonaws.com/phase3/data/NA19625/exome_alignment/NA19625.mapped.ILLUMINA.bwa.ASW.exome.20120522.bam",
-                        indexURL: "https://1000genomes.s3.amazonaws.com/phase3/data/NA19625/exome_alignment/NA19625.mapped.ILLUMINA.bwa.ASW.exome.20120522.bam.bai",
-                        name: "NA12878 - coverage only",
-                        showAlignments: false
-
-                    },
-                    // {
-                    //     type: "alignment",
-                    //     url: "https://1000genomes.s3.amazonaws.com/phase3/data/NA19625/exome_alignment/NA19625.mapped.ILLUMINA.bwa.ASW.exome.20120522.bam",
-                    //     indexURL: "https://1000genomes.s3.amazonaws.com/phase3/data/NA19625/exome_alignment/NA19625.mapped.ILLUMINA.bwa.ASW.exome.20120522.bam.bai",
-                    //     cacheBlocks: false,
-                    //     name: "NA12878 - cache off",
-                    // }
-                ]
-        };
+            "genome": "hg19",
+            "locus": "chr1:155,159,012-155,164,131",
+            "roi": [],
+            "tracks": [
+                {
+                    "type": "alignment",
+                    "url": "gs://genomics-public-data/platinum-genomes/bam/NA12878_S1.bam",
+                    "indexURL": "gs://genomics-public-data/platinum-genomes/bam/NA12878_S1.bam.bai",
+                    "name": "NA12878",
+                    "format": "bam"
+                }
+            ]
+        }
 
     igv.createBrowser(document.getElementById('igvDiv'), config)
         .then(browser => {