Merge branch 'master' into hubs_2

Author: jrobinso

dev/ucsc/slowHub.html

@@ -19,9 +19,9 @@
         includeTracks: true
     }
 
-
     const hub = await Hub.loadHub("https://hgdownload.soe.ucsc.edu/hubs/GCA/004/027/145/GCA_004027145.1/hub.txt", hubOptions)
 
+
     const igvConfig = {
         showChromosomeWidget: false,
         locus: hub.getDefaultPosition(),

js/browser.js

@@ -493,7 +493,9 @@ class Browser {
                     return new XMLSession(string, knownGenomes)
 
                 } else if (filename.endsWith("hub.txt")) {
+
                     const hub = await Hub.loadHub(urlOrFile, options)
+
                     if(chromosomeSelectWidget) {
                         chromosomeSelectWidget.hide()
                     }

js/ucsc/ucscHub.js

@@ -29,7 +29,6 @@ class Hub {
         return new Hub(url, stanzas, groups)
     }
 
-
     constructor(url, stanzas, groupStanzas) {
 
         const idx = url.lastIndexOf("/")
@@ -158,6 +157,7 @@ isPcr dynablat-01.soe.ucsc.edu 4040 dynamic GCF/000/186/305/GCF_000186305.1
         if (this.genomeStanza.hasProperty("twoBitBptURL")) {
             config.twoBitBptURL = this.baseURL + this.genomeStanza.getProperty("twoBitBptURL")
         }
+
         if (this.genomeStanza.hasProperty("twoBitBptUrl")) {
             config.twoBitBptURL = this.baseURL + this.genomeStanza.getProperty("twoBitBptUrl")
         }

package.json

@@ -53,7 +53,7 @@
     "circular-view": "github:igvteam/circular-view#v0.2.4",
     "eslint": "^6.4.0",
     "hdf5-indexed-reader": "github:jrobinso/hdf5-indexed-reader#v0.5.2",
-    "igv-ui": "github:igvteam/igv-ui#dat_slider_dialog",
+    "igv-ui": "github:igvteam/igv-ui#v1.5.3",
     "igv-utils": "github:igvteam/igv-utils#v1.4.8",
     "mocha": "^10.2.0",
     "rollup": "^2.66.0",

test/testUCSC.js

@@ -6,7 +6,6 @@ import BWReader from "../js/bigwig/bwReader.js"
 
 suite("ucsc utilities", function () {
 
-
     test("trix", async function () {
 
         this.timeout(200000)