misc

Author: turner

js/bam/bamTrack.js

@@ -30,7 +30,6 @@ import TrackBase from "../trackBase.js"
 import IGVGraphics from "../igv-canvas.js"
 import paintAxis from "../util/paintAxis.js"
 import {createCheckbox} from "../igv-icons.js"
-import MenuUtils from "../ui/menuUtils.js"
 import {PaletteColorTable} from "../util/colorPalletes.js"
 import {IGVColor, StringUtils} from "../../node_modules/igv-utils/src/index.js"
 import {makePairedAlignmentChords, makeSupplementalAlignmentChords, sendChords} from "../jbrowse/circularViewUtils.js"

js/feature/interactionTrack.js

@@ -29,7 +29,6 @@ import TrackBase from "../trackBase.js"
 import IGVGraphics from "../igv-canvas.js"
 import paintAxis from "../util/paintAxis.js"
 import {IGVColor, StringUtils} from "../../node_modules/igv-utils/src/index.js"
-import MenuUtils from "../ui/menuUtils.js"
 import {createCheckbox} from "../igv-icons.js"
 import {scoreShade} from "../util/ucscUtils.js"
 import FeatureSource from "./featureSource.js"

js/feature/segTrack.js

@@ -100,7 +100,7 @@ class SegTrack extends TrackBase {
         const menuItems = []
 
         menuItems.push('<hr/>')
-        menuItems.push(sortBySampleName(this.trackView))
+        menuItems.push(sortBySampleName())
 
         if (sampleDictionary) {
             menuItems.push('<hr/>')
@@ -536,15 +536,15 @@ class SegTrack extends TrackBase {
 }
 
 
-function sortBySampleName(trackView) {
+function sortBySampleName() {
 
     const object = $('<div>')
     object.text('Sort by sample names')
 
     function sampleNameSort () {
-        trackView.track.sampleKeys.sort((a, b) => trackView.sampleNameViewport.sortDirection * a.localeCompare(b))
-        trackView.repaintViews()
-        trackView.sampleNameViewport.sortDirection *= -1
+        this.sampleKeys.sort((a, b) => this.trackView.sampleNameViewport.sortDirection * a.localeCompare(b))
+        this.trackView.repaintViews()
+        this.trackView.sampleNameViewport.sortDirection *= -1
     }
 
     return { object, click:sampleNameSort }