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syllabus.html
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<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.0 Transitional//EN">
<html>
<head>
<meta http-equiv="content-type" content="text/html; charset=utf-8"/>
<title></title>
<meta name="generator" content="LibreOffice 4.3.6.2 (MacOSX)"/>
<meta name="author" content="Neal Davis"/>
<meta name="created" content="2015-06-03T15:31:54.406978000"/>
<meta name="changedby" content="Neal Davis"/>
<meta name="changed" content="2015-06-04T10:37:38.222645000"/>
<style type="text/css">
@page { margin: 0.79in }
p { margin-bottom: 0.1in; line-height: 120% }
td p { margin-bottom: 0in }
a:link { so-language: zxx }
</style>
</head>
<body lang="en-US" dir="ltr">
<p style="margin-bottom: 0in; line-height: 100%; page-break-before: always">
<font size="2" style="font-size: 11pt"><b>Target Audience</b></font></p>
<p style="margin-bottom: 0.1in; line-height: 100%"><font size="2" style="font-size: 11pt">The
“reluctant coder”: a graduate student in conventional
engineering (MechSE, MatSE, CEE, NPRE, etc.) with a need to write and
manage research codes, for instance at a national laboratory or in
academia. This demographic rarely has the prerequisite courses
required to take upper-level CS courses.</font></p>
<p style="margin-bottom: 0.1in; line-height: 100%"><font size="2" style="font-size: 11pt">Prerequisites
include: <i>CS 420 Parallel programming</i> or equivalent exposure
to HPC concepts (although these will be reviewed as well); <i>CS 450
Numerical analysis</i><span style="font-style: normal"> or </span><i>TAM
470 Computational mechanics</i><span style="font-style: normal"> or
equivalent exposure to numerical concepts.</span></font></p>
<p style="margin-bottom: 0in; line-height: 100%"><font size="2" style="font-size: 11pt"><b>Objective</b><b>s</b></font></p>
<p style="margin-bottom: 0in; font-weight: normal; line-height: 100%">
<font size="2" style="font-size: 11pt">To teach students the
components and methods of <i>modern scientific software development</i><span style="font-style: normal">
</span><span style="font-style: normal">by exposure to lectures and
hands-on tutorials exemplifying component principles. </span><span style="font-style: normal">The
workshop </span><span style="font-style: normal">days will focus on:</span></font></p>
<ol>
<li/>
<p style="margin-bottom: 0in; font-weight: normal; line-height: 100%">
<font size="2" style="font-size: 11pt"><span style="font-style: normal">the
</span><i>basis and elements of modern scientific software</i><span style="font-style: normal">
</span><span style="font-style: normal">and the </span><i>development
process</i><span style="font-style: normal">;</span></font></p>
<li/>
<p style="margin-bottom: 0in; font-weight: normal; line-height: 100%">
<font size="2" style="font-size: 11pt"><span style="font-style: normal">the
</span><i>integration of a modern numerical library</i><span style="font-style: normal">,
PETSc;</span></font></p>
<li/>
<p style="margin-bottom: 0.1in; font-weight: normal; line-height: 100%">
<font size="2" style="font-size: 11pt"><span style="font-style: normal">the
</span><i>development of a simple multiphysics code</i><span style="font-style: normal">
using </span><span style="font-style: normal">the </span><span style="font-style: normal">MOOSE
</span><span style="font-style: normal">Framework </span><span style="font-style: normal">(built
on </span><span style="font-style: normal">top of </span><span style="font-style: normal">PETSc).</span></font></p>
</ol>
<p style="margin-bottom: 0in; line-height: 100%"><font size="2" style="font-size: 11pt"><b>Agenda</b></font></p>
<table width="100%" cellpadding="0" cellspacing="0">
<col width="32*">
<col width="134*">
<col width="90*">
<tr valign="top">
<td width="13%" style="border: none; padding: 0in">
<p style="font-weight: normal"><font face="Museo Slab"><font size="1" style="font-size: 8pt">AUGUST
18/T</font></font></p>
</td>
<td width="52%" style="border: none; padding: 0in">
<p style="font-weight: normal"><br/>
</p>
</td>
<td width="35%" style="border: none; padding: 0in">
<p style="font-weight: normal"><br/>
</p>
</td>
</tr>
<tr valign="top">
<td width="13%" style="border: none; padding: 0in">
<p><font size="2" style="font-size: 11pt">morning</font></p>
</td>
<td width="52%" style="border: none; padding: 0in">
<p><font size="2" style="font-size: 11pt">High-Performance
Computing concepts review</font></p>
<p><font size="2" style="font-size: 11pt">(parallelism, MPI,
distributed memory)</font></p>
</td>
<td width="35%" style="border: none; padding: 0in">
<p><font size="2" style="font-size: 11pt">Ananth Grama? / CS,
Purdue</font></p>
<p><br/>
</p>
</td>
</tr>
<tr valign="top">
<td width="13%" style="border: none; padding: 0in">
<p><font size="2" style="font-size: 11pt">afternoon</font></p>
</td>
<td width="52%" style="border: none; padding: 0in">
<p><font size="2" style="font-size: 11pt">verification and
validation</font></p>
<p><font size="2" style="font-size: 11pt">scientific software
development methodology</font></p>
<p><font size="2" style="font-size: 11pt">reproducibility &
version control; code review</font></p>
</td>
<td width="35%" style="border: none; padding: 0in">
<p><font size="2" style="font-size: 11pt">Ananth Grama / CS,
Purdue</font></p>
<p><font size="2" style="font-size: 11pt">John Turner / CASL, Oak
Ridge</font></p>
<p><font size="2" style="font-size: 11pt">Neal Davis / CSE,
Illinois</font></p>
</td>
</tr>
<tr valign="top">
<td width="13%" style="border: none; padding: 0in">
<p style="font-weight: normal"><font face="Museo Slab"><font size="1" style="font-size: 8pt">AUGUST
19/W</font></font></p>
</td>
<td width="52%" style="border: none; padding: 0in">
<p style="font-weight: normal"><br/>
</p>
</td>
<td width="35%" style="border: none; padding: 0in">
<p style="font-weight: normal"><br/>
</p>
</td>
</tr>
<tr valign="top">
<td width="13%" style="border: none; padding: 0in">
<p><font size="2" style="font-size: 11pt">morning</font></p>
</td>
<td width="52%" style="border: none; padding: 0in">
<p style="font-style: normal; font-weight: normal; text-decoration: none">
<font face="Linux Libertine O"><font size="2" style="font-size: 11pt">PETSc
introduction & exercises</font></font></p>
</td>
<td width="35%" style="border: none; padding: 0in">
<p><font size="2" style="font-size: 11pt">Jed Brown? / ANL ; Bill
Gropp / CS</font></p>
</td>
</tr>
<tr valign="top">
<td width="13%" style="border: none; padding: 0in">
<p><font size="2" style="font-size: 11pt">afternoon</font></p>
</td>
<td width="52%" style="border: none; padding: 0in">
<p style="font-style: normal; font-weight: normal; text-decoration: none">
<font face="Linux Libertine O"><font size="2" style="font-size: 11pt">PETSc
introduction & exercises</font></font></p>
</td>
<td width="35%" style="border: none; padding: 0in">
<p>—</p>
</td>
</tr>
<tr valign="top">
<td width="13%" style="border: none; padding: 0in">
<p style="font-weight: normal"><font face="Museo Slab"><font size="1" style="font-size: 8pt">AUGUST
20/R</font></font></p>
</td>
<td width="52%" style="border: none; padding: 0in">
<p style="font-weight: normal"><br/>
</p>
</td>
<td width="35%" style="border: none; padding: 0in">
<p style="font-weight: normal"><br/>
</p>
</td>
</tr>
<tr valign="top">
<td width="13%" style="border: none; padding: 0in">
<p><font size="2" style="font-size: 11pt">morning</font></p>
</td>
<td width="52%" style="border: none; padding: 0in">
<p><font size="2" style="font-size: 11pt">MOOSE introduction &
exercises</font></p>
</td>
<td width="35%" style="border: none; padding: 0in">
<p><font size="2" style="font-size: 11pt">Derek Gaston / INL</font></p>
</td>
</tr>
<tr valign="top">
<td width="13%" style="border: none; padding: 0in">
<p><font size="2" style="font-size: 11pt">afternoon</font></p>
</td>
<td width="52%" style="border: none; padding: 0in">
<p><font size="2" style="font-size: 11pt">MOOSE introduction &
exercises</font></p>
</td>
<td width="35%" style="border: none; padding: 0in">
<p>—</p>
</td>
</tr>
<tr valign="top">
<td width="13%" style="border: none; padding: 0in">
<p style="font-weight: normal"><font face="Museo Slab"><font size="1" style="font-size: 8pt">AUGUST
21/F</font></font></p>
</td>
<td width="52%" style="border: none; padding: 0in">
<p style="font-weight: normal"><br/>
</p>
</td>
<td width="35%" style="border: none; padding: 0in">
<p style="font-weight: normal"><br/>
</p>
</td>
</tr>
<tr valign="top">
<td width="13%" style="border: none; padding: 0in">
<p><font size="2" style="font-size: 11pt">morning</font></p>
</td>
<td width="52%" style="border: none; padding: 0in">
<p><font size="2" style="font-size: 11pt">MOOSE continuation &
exercises</font></p>
</td>
<td width="35%" style="border: none; padding: 0in">
<p><font size="2" style="font-size: 11pt">Derek Gaston / INL</font></p>
</td>
</tr>
<tr valign="top">
<td width="13%" style="border: none; padding: 0in">
<p><font size="2" style="font-size: 11pt">afternoon</font></p>
</td>
<td width="52%" style="border: none; padding: 0in">
<p><font size="2" style="font-size: 11pt">MOOSE continuation &
exercises</font></p>
</td>
<td width="35%" style="border: none; padding: 0in">
<p>—</p>
</td>
</tr>
</table>
<p style="margin-top: 0.1in; margin-bottom: 0in; line-height: 100%"><font size="2" style="font-size: 11pt"><b>Projects</b></font></p>
<p style="margin-bottom: 0.1in; font-weight: normal; line-height: 100%">
<font size="2" style="font-size: 11pt">Each project will have clearly
defined goals, specifications, and benchmarks. The projects will
focus on the translation of model concepts into numerics and
algorithms as well as providing exposure to the software development
concepts discussed in the workshop.</font></p>
<p style="margin-bottom: 0.1in; font-weight: normal; line-height: 100%">
<font size="2" style="font-size: 11pt">Development for PETSc and
MOOSE should take place on a regular serial platform<sup>[<a href="http://www.mcs.anl.gov/petsc/petsc-current/docs/codemanagement.html">ref</a>]</sup>,
and we will provide either a VM or compilation support for those
interested. For execution, the PETSc and MOOSE libraries will be
installed and supported on Blue Waters as well as Campus Cluster.</font></p>
<p style="margin-bottom: 0in; line-height: 100%"><font size="2" style="font-size: 11pt"><b>Contributors</b></font></p>
<p style="margin-bottom: 0in; font-weight: normal; line-height: 100%">
<font size="2" style="font-size: 11pt">We are involving researchers
and developers from the following organizations:</font></p>
<ul>
<li/>
<p style="margin-bottom: 0in; font-weight: normal; line-height: 100%">
<font size="2" style="font-size: 11pt">Argonne National Laboratory
(PETSc)</font></p>
<li/>
<p style="margin-bottom: 0in; font-weight: normal; line-height: 100%">
<font size="2" style="font-size: 11pt">Blue Waters, Illinois</font></p>
<li/>
<p style="margin-bottom: 0in; font-weight: normal; line-height: 100%">
<font size="2" style="font-size: 11pt">Computer Science, Illinois</font></p>
<li/>
<p style="margin-bottom: 0in; font-weight: normal; line-height: 100%">
<font size="2" style="font-size: 11pt">Computer Science, Purdue</font></p>
<li/>
<p style="margin-bottom: 0in; font-weight: normal; line-height: 100%">
<font size="2" style="font-size: 11pt">Consortium for Advanced
Light-water reactor Simulation (CASL), Oak Ridge National Laboratory</font></p>
<li/>
<p style="margin-bottom: 0in; font-weight: normal; line-height: 100%">
<font size="2" style="font-size: 11pt">Idaho National Laboratory
(MOOSE)</font></p>
<li/>
<p style="margin-bottom: 0in; font-weight: normal; line-height: 100%">
<font size="2" style="font-size: 11pt">National Center for
Supercomputing Applications</font></p>
</ul>
</body>
</html>