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index.html
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---
layout: default
title: IGF Help Pages
---
<div class="container-fluid">
<div class="row">
<nav class="col-sm-3 col-md-2 d-none d-sm-block bg-light sidebar">
<ul class="nav nav-pills flex-column">
<li class="nav-item">
<a class="nav-link active" href="index.html">Main<span class="sr-only">(current)</span></a>
</li>
<li class="nav-item">
<a class="nav-link " href="qc_report_page.html">Project QC Report<span class="sr-only"></span></a>
</li>
<li class="nav-item">
<a class="nav-link " href="demultiplexing.html">Demultiplexing Fastq<span class="sr-only"></span></a>
</li>
<li class="nav-item">
<a class="nav-link " href="fastq_qc.html">Fastq QC<span class="sr-only"></span></a>
</li>
<li class="nav-item">
<a class="nav-link " href="alignment_qc.html">Alignment QC<span class="sr-only"></span></a>
</li>
<li class="nav-item">
<a class="nav-link " href="analyses_pipelines.html">Analyses pipelines<span class="sr-only"></span></a>
</li>
<li class="nav-item">
<a class="nav-link " href="sc_transcriptome.html">Single cell Transcriptome<span class="sr-only"></span></a>
</li>
<li class="nav-item">
<a class="nav-link " href="ref_genome.html">Reference Genome<span class="sr-only"></span></a>
</li>
<li class="nav-item">
<a class="nav-link " href="slides_list.html">List of slides<span class="sr-only"></span></a>
</li>
<li class="nav-item">
<a class="nav-link " href="notebook_resources.html">Notebook resources<span class="sr-only"></span></a>
</li>
<li class="nav-item">
<a class="nav-link " href="data_access.html">Data Access<span class="sr-only"></span></a>
</li>
<li class="nav-item">
<a class="nav-link " href="acknowledgement.html">Acknowledgement<span class="sr-only"></span></a>
</li>
</ul>
</nav>
<main role="main" class="col-sm-9 ml-sm-auto col-md-10 pt-3">
<h1>Help Information</h1>
<h2>List of help pages</h2>
<ul>
<li><a href="qc_report_page.html">Project QC Report</a></li>
<li><a href="demultiplexing.html">Demultiplexing of the raw bcl files</a></li>
<li><a href="fastq_qc.html"> Running QC check for raw fastq data</a></li>
<li><a href="alignment_qc.html">Alignment QC</a></li>
<li><a href="sc_transcriptome.html">Running data analysis for single cell samples</a></li>
<li><a href="ref_genome.html">Reference genome datasets</a></li>
<li><a href="slides_list.html">List of slides</a></li>
<li><a href="notebook_resources.html">Notebook resources</a></li>
<li><a href="data_access.html">Data access</a></li>
<li><a href="acknowledgement.html">How should I acknowledge your facility?</a></li>
</ul>
</main>
</div>
</div>