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Data guidelines for checklists

Lien Reyserhove edited this page Feb 8, 2021 · 6 revisions
Term Status
taxonID Required
scientificNameID Share if available
acceptedNameUsageID Share if available (?) --> taxonomic checklist
parentNameUsageID Share if available (?) (depends on scope)
originalNameUsageID Do not use
nameAccordingToID
namePublishedInID
taxonConceptID
scientificName Required
acceptedNameUsage Share if available
parentNameUsage Share if available (depends on scope)
originalNameUsage Do not use
nameAccordingTo Do not use
namePublishedIn Do not use
namePublishedInYear Do not use
higherClassification Do not use
kingdom Required
phylum Strongly recommended
class Strongly recommended
order Strongly recommended
family Strongly recommended
genus Strongly recommended
subgenus Share if available
specificEpithet avoid use
infraspecificEpithet avoid use
taxonRank Required
verbatimTaxonRank Do not use
scientificNameAuthorship Avoid use
vernacularName Share if available
nomenclaturalCode Required
taxonomicStatus Share if available
nomenclaturalStatus
taxonRemarks

General

Regional checklist

Taxonomical checklist

taxonID

Should be globally unique and preferably stable. GBIF uses the taxonID to assess if a (re)published taxon is a new one or one they already have. We therefore strongly recommend to choose a taxonID that is as globally unique and stable as possible. If such a taxon identifier is not present in the source data or the identifiers used there can easily change over time (e.g. numbered rows).

Suggested components to combine as input for taxonID:

  • dataset shortname
  • scientific name
  • kingdom

Scientific name and kingdom can be used as input for a hash function. This function creates a randomized code of fixed length from an input value. For a given input value, the code will always be the same and unique.

Some examples:

  • ...
  • ...

scientificNameID

acceptedNameUsageID

Share if an acceptedNameUsage is provided

parentNameUsageID

Share if an parentNameUsage is provided

originalNameUsageID

Do not use, use scientificNameID if available

nameAccordingToID

Do not use, we hardly have ...

namePublishedInID

Do not use, we hardly have ...

taxonConceptID

Do not use, we hardly have ...

scientificName

Should preferebly include date and authorship information in case of genera / species (higher level?)?

e.g. ...

acceptedNameUsage

Use if synonyms, ... are also included in the list

parentNameUsage

Use in case higher hierarchy is also included in the list, e.g. ...

originalNameUsage

Do not use, rather link to the scientificNameID

nameAccordingTo

Do not use,...

namePublishedIn

namePublishedInYear

higherClassification

Avoid use, this

kingdom

phylum

class

order

family

genus

subgenus

specificEpithet

Avoid use, this information is provided in scientificName

infraspecificEpithet

Avoid use, this information is provided in scientificName

taxonRank

Required. The taxonomic rank of the most specific name in the scientificName. Recommended vocabulary: http://rs.gbif.org/vocabulary/gbif/rank.xml

verbatimTaxonRank scientificNameAuthorship vernacularName nomenclaturalCode taxonomicStatus nomenclaturalStatus taxonRemarks