NAMESPACE

# Generated by roxygen2: do not edit by hand

export("%>%")
export(.ConnectionBiomart)
export(.row_data_annotation_cols)
export(GeneSpec)
export(HermesData)
export(HermesDataFromMatrix)
export(`metadata<-`)
export(add_quality_flags)
export(assert_proportion)
export(calc_pca)
export(cat_with_newline)
export(check_proportion)
export(colMeanZscores)
export(colPrinComp1)
export(col_data_with_genes)
export(connect_biomart)
export(control_normalize)
export(control_quality)
export(correlate)
export(cut_quantile)
export(df_cols_to_factor)
export(diff_expression)
export(draw_barplot)
export(draw_boxplot)
export(draw_genes_barplot)
export(draw_heatmap)
export(draw_libsize_densities)
export(draw_libsize_hist)
export(draw_libsize_qq)
export(draw_nonzero_boxplot)
export(draw_scatterplot)
export(expect_proportion)
export(extraColDataNames)
export(extraRowDataNames)
export(filter)
export(gene_spec)
export(genes)
export(get_low_depth)
export(get_low_expression)
export(get_tech_failure)
export(h_all_duplicated)
export(h_cpm)
export(h_df_factors_with_explicit_na)
export(h_diff_expr_deseq2)
export(h_diff_expr_voom)
export(h_draw_boxplot_df)
export(h_ensembl_to_entrez_ids)
export(h_get_annotation_biomart)
export(h_get_granges_by_id)
export(h_get_size_biomart)
export(h_has_req_annotations)
export(h_low_depth_flag)
export(h_low_expression_flag)
export(h_map_pos)
export(h_parens)
export(h_pca_df_r2_matrix)
export(h_pca_var_rsquared)
export(h_rlog)
export(h_rpkm)
export(h_short_list)
export(h_strip_prefix)
export(h_tech_failure_flag)
export(h_tpm)
export(h_unique_labels)
export(h_voom)
export(h_vst)
export(inner_join_cdisc)
export(is_class)
export(is_constant)
export(is_counts_vector)
export(is_hermes_data)
export(is_list_with)
export(one_provided)
export(prefix)
export(query)
export(set_tech_failure)
export(summary)
export(test_proportion)
export(top_genes)
export(wrap_in_mae)
exportClasses(AnyHermesData)
exportClasses(ConnectionBiomart)
exportClasses(HermesData)
exportClasses(HermesDataCor)
exportClasses(HermesDataDiffExpr)
exportClasses(HermesDataPca)
exportClasses(HermesDataPcaCor)
exportClasses(HermesDataSummary)
exportClasses(HermesDataTopGenes)
exportClasses(RangedHermesData)
exportMethods("annotation<-")
exportMethods("counts<-")
exportMethods(annotation)
exportMethods(autoplot)
exportMethods(correlate)
exportMethods(counts)
exportMethods(extraColDataNames)
exportMethods(extraRowDataNames)
exportMethods(filter)
exportMethods(genes)
exportMethods(isEmpty)
exportMethods(lapply)
exportMethods(metadata)
exportMethods(normalize)
exportMethods(query)
exportMethods(rename)
exportMethods(samples)
exportMethods(show)
exportMethods(summary)
import(MultiAssayExperiment)
import(SummarizedExperiment)
import(assertthat)
import(checkmate)
import(ggfortify)
import(ggplot2)
import(methods)
importClassesFrom(biomaRt,Mart)
importFrom(Biobase,samples)
importFrom(BiocGenerics,"annotation<-")
importFrom(BiocGenerics,"counts<-")
importFrom(BiocGenerics,annotation)
importFrom(BiocGenerics,counts)
importFrom(BiocGenerics,normalize)
importFrom(ComplexHeatmap,add_heatmap)
importFrom(R6,is.R6)
importFrom(Rdpack,append_to_Rd_list)
importFrom(S4Vectors,"metadata<-")
importFrom(S4Vectors,isEmpty)
importFrom(S4Vectors,rename)
importFrom(circlize,add_transparency)
importFrom(dplyr,mutate)
importFrom(forcats,as_factor)
importFrom(ggrepel,geom_label_repel)
importFrom(lifecycle,deprecate_soft)
importFrom(magrittr,"%>%")
importFrom(purrr,accumulate)
importFrom(rlang,.data)
importMethodsFrom(BiocGenerics,lapply)
importMethodsFrom(S4Vectors,metadata)