check.yaml

---
name: Check 🛠

on:
  pull_request:
    types:
      - opened
      - synchronize
      - reopened
      - ready_for_review
    branches:
      - main
  push:
    branches:
      - main
  workflow_dispatch:

jobs:
  audit:
    name: Audit Dependencies 🕵️‍♂️
    uses: insightsengineering/r.pkg.template/.github/workflows/audit.yaml@main
  r-cmd:
    name: R CMD Check 🧬
    uses: insightsengineering/r.pkg.template/.github/workflows/build-check-install.yaml@main
    secrets:
      REPO_GITHUB_TOKEN: ${{ secrets.REPO_GITHUB_TOKEN }}
    with:
      deps-installation-method: setup-r-dependencies
      lookup-refs: |
        insightsengineering/random.cdisc.data
        insightsengineering/rtables
        insightsengineering/formatters
        insightsengineering/tern
        insightsengineering/rlistings
        pharmaverse/pharmaverseadam
      additional-env-vars: |
        _R_CHECK_CRAN_INCOMING_REMOTE_=false
      additional-r-cmd-check-params: --as-cran ### We need to test snapshots, not released
      enforce-note-blocklist: true
      note-blocklist: |
        checking dependencies in R code .* NOTE
        checking R code for possible problems .* NOTE
        checking examples .* NOTE
        checking Rd line widths .* NOTE
        checking S3 generic/method consistency .* NOTE
        checking Rd .usage sections .* NOTE
        checking for unstated dependencies in vignettes .* NOTE
        checking top-level files .* NOTE
      concurrency-group: cran
  r-cmd-non-cran:
    name: R CMD Check (non-CRAN) 🧬
    uses: insightsengineering/r.pkg.template/.github/workflows/build-check-install.yaml@main
    secrets:
      REPO_GITHUB_TOKEN: ${{ secrets.REPO_GITHUB_TOKEN }}
    with:
      deps-installation-method: setup-r-dependencies
      lookup-refs: |
        insightsengineering/random.cdisc.data
        insightsengineering/rtables
        insightsengineering/formatters
        insightsengineering/tern
        insightsengineering/rlistings
        pharmaverse/pharmaverseadam
      additional-env-vars: |
        NOT_CRAN=true
      enforce-note-blocklist: true
      note-blocklist: |
        checking dependencies in R code .* NOTE
        checking R code for possible problems .* NOTE
        checking examples .* NOTE
        checking Rd line widths .* NOTE
        checking S3 generic/method consistency .* NOTE
        checking Rd .usage sections .* NOTE
        checking for unstated dependencies in vignettes .* NOTE
        checking top-level files .* NOTE
      concurrency-group: non-cran
      unit-test-report-directory: unit-test-report-non-cran
  coverage:
    name: Coverage 📔
    uses: insightsengineering/r.pkg.template/.github/workflows/test-coverage.yaml@main
    secrets:
      REPO_GITHUB_TOKEN: ${{ secrets.REPO_GITHUB_TOKEN }}
    with:
      deps-installation-method: setup-r-dependencies
      lookup-refs: |
        insightsengineering/random.cdisc.data
        insightsengineering/rtables
        insightsengineering/formatters
        insightsengineering/tern
        insightsengineering/rlistings
        pharmaverse/pharmaverseadam
      additional-env-vars: |
        NOT_CRAN=true
  linter:
    if: github.event_name == 'pull_request'
    name: SuperLinter 🦸‍♀️
    uses: insightsengineering/r.pkg.template/.github/workflows/linter.yaml@main
  roxygen:
    name: Roxygen 🅾
    uses: insightsengineering/r.pkg.template/.github/workflows/roxygen.yaml@main
    secrets:
      REPO_GITHUB_TOKEN: ${{ secrets.REPO_GITHUB_TOKEN }}
    with:
      deps-installation-method: setup-r-dependencies
      lookup-refs: |
        insightsengineering/random.cdisc.data
        insightsengineering/rtables
        insightsengineering/formatters
        insightsengineering/tern
        insightsengineering/rlistings
        pharmaverse/pharmaverseadam
      auto-update: true
  gitleaks:
    name: gitleaks 💧
    uses: insightsengineering/r.pkg.template/.github/workflows/gitleaks.yaml@main
  spelling:
    name: Spell Check 🆎
    uses: insightsengineering/r.pkg.template/.github/workflows/spelling.yaml@main
    secrets:
      REPO_GITHUB_TOKEN: ${{ secrets.REPO_GITHUB_TOKEN }}
  links:
    if: github.event_name == 'pull_request'
    name: Check URLs 🌐
    uses: insightsengineering/r.pkg.template/.github/workflows/links.yaml@main
  vbump:
    name: Version Bump 🤜🤛
    if: github.event_name == 'push'
    uses: insightsengineering/r.pkg.template/.github/workflows/version-bump.yaml@main
    secrets:
      REPO_GITHUB_TOKEN: ${{ secrets.REPO_GITHUB_TOKEN }}
  version:
    name: Version Check 🏁
    uses: insightsengineering/r.pkg.template/.github/workflows/version.yaml@main
  licenses:
    name: License Check 🃏
    uses: insightsengineering/r.pkg.template/.github/workflows/licenses.yaml@main
  style:
    if: github.event_name == 'pull_request'
    name: Style Check 👗
    uses: insightsengineering/r.pkg.template/.github/workflows/style.yaml@main
    with:
      auto-update: true
    secrets:
      REPO_GITHUB_TOKEN: ${{ secrets.REPO_GITHUB_TOKEN }}
  grammar:
    if: github.event_name == 'pull_request'
    name: Grammar Check 🔤
    uses: insightsengineering/r.pkg.template/.github/workflows/grammar.yaml@main