Fix tests #56
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Fix tests #56
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Unit Tests Summary 1 files 4 suites 1s ⏱️ Results for commit 7158712. ♻️ This comment has been updated with latest results. |
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Code Coverage SummaryDiff against mainResults for commit: 7158712 Minimum allowed coverage is ♻️ This comment has been updated with latest results |
donyunardi
approved these changes
Aug 29, 2024
|
Thanks for the comment. I checked this again and push the changes to handle edge case you are facing |
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Hey, after installing > library(verdepcheck)
> packageVersion("verdepcheck")
[1] ‘0.0.0.9001’
> verdepcheck::min_isolated_deps_check("../teal.slice")
✔ Loading metadata database ... done
ℹ Creating temporary DESCRIPTION file: C:\Users\kosinsm4\AppData\Local\Temp\Rtmpo7PFaf\file2a641a99179a
ℹ Creating library directory: C:\Users\kosinsm4\AppData\Local\Temp\Rtmpo7PFaf\file2a64707a2728
✔ Updated metadata database: 2.22 MB in 2 files.
✔ Updating metadata database ... done
ℹ Getting 69 pkgs (46.57 MB), 52 (65.28 MB) cached
✔ Got S4Vectors 0.42.1 (x86_64-w64-mingw32) (2.39 MB)
✔ Got viridisLite 0.4.2 (i386+x86_64-w64-mingw32) (1.30 MB)
✔ Got yaml 2.3.7 (i386+x86_64-w64-mingw32) (114.34 kB)
✔ Got xfun 0.39 (i386+x86_64-w64-mingw32) (445.79 kB)
✔ Got waldo 0.4.0 (i386+x86_64-w64-mingw32) (103.27 kB)
✔ Got teal.data 0.4.0 (i386+x86_64-w64-mingw32) (2.16 MB)
✔ Got xtable 1.8-4 (i386+x86_64-w64-mingw32) (711.34 kB)
✔ Got withr 3.0.0 (i386+x86_64-w64-mingw32) (250.88 kB)
✔ Got rprojroot 2.0.4 (i386+x86_64-w64-mingw32) (115.37 kB)
✔ Got rematch2 2.1.2 (i386+x86_64-w64-mingw32) (49.10 kB)
✔ Got rmarkdown 2.23 (i386+x86_64-w64-mingw32) (2.68 MB)
✔ Got ps 1.7.1 (i386+x86_64-w64-mingw32) (553.93 kB)
✔ Got processx 3.7.0 (i386+x86_64-w64-mingw32) (856.37 kB)
✔ Got promises 1.2.1 (i386+x86_64-w64-mingw32) (2.00 MB)
✔ Got IRanges 2.38.1 (x86_64-w64-mingw32) (2.34 MB)
✔ Got httpuv 1.6.14 (i386+x86_64-w64-mingw32) (977.35 kB)
✔ Got htmlwidgets 1.5.3 (source) (323.59 kB)
✔ Got rlang 1.1.3 (i386+x86_64-w64-mingw32) (1.61 MB)
✔ Got rtables 0.6.6 (i386+x86_64-w64-mingw32) (3.82 MB)
✔ Got httr 1.4.7 (i386+x86_64-w64-mingw32) (497.92 kB)
✔ Got GenomeInfoDb 1.40.1 (i386+x86_64-w64-mingw32) (4.27 MB)
✔ Got desc 1.4.2 (i386+x86_64-w64-mingw32) (333.30 kB)
✔ Got crosstalk 1.1.0.1 (source) (671.93 kB)
✔ Got curl 5.2.2 (i386+x86_64-w64-mingw32) (3.22 MB)
✔ Got isoband 0.2.7 (i386+x86_64-w64-mingw32) (1.93 MB)
✔ Got tidyselect 1.2.1 (i386+x86_64-w64-mingw32) (229.99 kB)
✔ Got tibble 3.2.1 (i386+x86_64-w64-mingw32) (695.40 kB)
✔ Got munsell 0.5.0 (i386+x86_64-w64-mingw32) (246.19 kB)
✔ Got data.table 1.13.4 (source) (5.22 MB)
✔ Got evaluate 0.21 (i386+x86_64-w64-mingw32) (84.76 kB)
✔ Got MultiAssayExperiment 1.30.3 (i386+x86_64-w64-mingw32) (2.07 MB)
✔ Got tidyr 1.3.1 (i386+x86_64-w64-mingw32) (1.27 MB)
✔ Got mime 0.12 (i386+x86_64-w64-mingw32) (40.68 kB)
✔ Got fansi 1.0.6 (i386+x86_64-w64-mingw32) (320.43 kB)
✔ Got ellipsis 0.3.2 (i386+x86_64-w64-mingw32) (40.88 kB)
✔ Got openssl 2.2.1 (i386+x86_64-w64-mingw32) (3.40 MB)
✔ Got tinytex 0.45 (i386+x86_64-w64-mingw32) (138.28 kB)
✔ Got R.oo 1.25.0 (i386+x86_64-w64-mingw32) (1.01 MB)
✔ Got pkgload 1.3.0 (i386+x86_64-w64-mingw32) (178.23 kB)
✔ Got vctrs 0.6.5 (i386+x86_64-w64-mingw32) (1.34 MB)
✔ Got utf8 1.2.4 (i386+x86_64-w64-mingw32) (149.20 kB)
✔ Got teal.logger 0.2.0 (i386+x86_64-w64-mingw32) (54.20 kB)
✔ Got R.methodsS3 1.8.2 (i386+x86_64-w64-mingw32) (85.30 kB)
✔ Got R.cache 0.16.0 (i386+x86_64-w64-mingw32) (114.60 kB)
✔ Got purrr 1.0.2 (i386+x86_64-w64-mingw32) (511.30 kB)
✔ Got shinyWidgets 0.8.0 (source) (790.96 kB)
✔ Got generics 0.1.3 (i386+x86_64-w64-mingw32) (83.89 kB)
✔ Got fs 1.6.3 (i386+x86_64-w64-mingw32) (397.49 kB)
✔ Got fontawesome 0.5.2 (i386+x86_64-w64-mingw32) (1.35 MB)
✔ Got shinyjs 2.1.0 (i386+x86_64-w64-mingw32) (1.11 MB)
✔ Got ggplot2 3.4.4 (i386+x86_64-w64-mingw32) (4.35 MB)
✔ Got knitr 1.43 (i386+x86_64-w64-mingw32) (1.51 MB)
✔ Got formatters 0.5.5 (i386+x86_64-w64-mingw32) (4.52 MB)
✔ Got labeling 0.4.3 (i386+x86_64-w64-mingw32) (63.85 kB)
✔ Got jsonlite 1.8.8 (i386+x86_64-w64-mingw32) (1.11 MB)
✔ Got brio 1.1.3 (i386+x86_64-w64-mingw32) (38.55 kB)
✔ Got crayon 1.5.3 (i386+x86_64-w64-mingw32) (166.48 kB)
✔ Got cachem 1.0.8 (i386+x86_64-w64-mingw32) (73.54 kB)
✔ Got base64enc 0.1-3 (i386+x86_64-w64-mingw32) (32.80 kB)
✔ Got R.utils 2.12.3 (i386+x86_64-w64-mingw32) (1.46 MB)
✔ Got logger 0.3.0 (i386+x86_64-w64-mingw32) (757.59 kB)
✔ Got later 1.3.2 (i386+x86_64-w64-mingw32) (441.09 kB)
✔ Got testthat 3.1.5 (source) (704.92 kB)
✔ Got stringi 1.8.4 (i386+x86_64-w64-mingw32) (15.01 MB)
✔ Got hexbin 1.28.1 (source) (661.10 kB)
✔ Got RColorBrewer 1.1-3 (i386+x86_64-w64-mingw32) (54.57 kB)
✔ Got rappdirs 0.3.3 (i386+x86_64-w64-mingw32) (52.48 kB)
✔ Got R6 2.5.1 (i386+x86_64-w64-mingw32) (85.25 kB)
✔ Got gtable 0.3.4 (i386+x86_64-w64-mingw32) (227.93 kB)
✔ Got glue 1.7.0 (i386+x86_64-w64-mingw32) (163.13 kB)
✔ Got bslib 0.6.2 (i386+x86_64-w64-mingw32) (6.48 MB)
✔ Got callr 3.7.2 (i386+x86_64-w64-mingw32) (445.66 kB)
✔ Got farver 2.1.1 (i386+x86_64-w64-mingw32) (1.51 MB)
✔ Got anytime 0.3.9 (i386+x86_64-w64-mingw32) (715.93 kB)
✔ Got abind 1.4-5 (i386+x86_64-w64-mingw32) (64.68 kB)
✔ Got checkmate 2.3.1 (i386+x86_64-w64-mingw32) (746.81 kB)
✔ Got pillar 1.9.0 (i386+x86_64-w64-mingw32) (663.49 kB)
✔ Got lifecycle 1.0.4 (i386+x86_64-w64-mingw32) (141.91 kB)
✔ Got lazyeval 0.2.2 (i386+x86_64-w64-mingw32) (162.48 kB)
✔ Got magrittr 2.0.3 (i386+x86_64-w64-mingw32) (229.11 kB)
✔ Got styler 1.10.2 (i386+x86_64-w64-mingw32) (760.11 kB)
✔ Got fastmap 1.1.1 (i386+x86_64-w64-mingw32) (133.42 kB)
✔ Got diffobj 0.3.5 (i386+x86_64-w64-mingw32) (1.03 MB)
✔ Got teal.code 0.5.0 (i386+x86_64-w64-mingw32) (204.73 kB)
✔ Got sys 3.4.2 (i386+x86_64-w64-mingw32) (46.89 kB)
✔ Got digest 0.6.35 (i386+x86_64-w64-mingw32) (217.29 kB)
✔ Got praise 1.0.0 (i386+x86_64-w64-mingw32) (20.25 kB)
✔ Got pkgconfig 2.0.3 (i386+x86_64-w64-mingw32) (23.00 kB)
✔ Got plotly 4.9.2.2 (source) (3.70 MB)
✔ Got htmltools 0.5.8 (i386+x86_64-w64-mingw32) (363.74 kB)
✔ Got sass 0.4.9 (i386+x86_64-w64-mingw32) (2.61 MB)
✔ Got backports 1.4.1 (i386+x86_64-w64-mingw32) (105.18 kB)
✔ Got askpass 1.2.0 (i386+x86_64-w64-mingw32) (74.42 kB)
✔ Got jquerylib 0.1.4 (i386+x86_64-w64-mingw32) (526.15 kB)
✔ Got highr 0.10 (i386+x86_64-w64-mingw32) (46.92 kB)
✔ Got shiny 1.8.0 (i386+x86_64-w64-mingw32) (4.56 MB)
✔ Got sourcetools 0.1.7-1 (i386+x86_64-w64-mingw32) (126.84 kB)
✔ Got teal.widgets 0.4.2 (i386+x86_64-w64-mingw32) (201.66 kB)
✔ Got Rcpp 1.0.12 (i386+x86_64-w64-mingw32) (2.87 MB)
✔ Got cli 3.6.2 (i386+x86_64-w64-mingw32) (1.36 MB)
✔ Got stringr 1.5.1 (i386+x86_64-w64-mingw32) (324.14 kB)
✔ Got shinycssloaders 1.0.0 (i386+x86_64-w64-mingw32) (141.29 kB)
✔ Got matrixStats 1.3.0 (i386+x86_64-w64-mingw32) (552.07 kB)
✔ Got colorspace 2.1-0 (i386+x86_64-w64-mingw32) (2.64 MB)
✔ Got memoise 2.0.1 (i386+x86_64-w64-mingw32) (51.62 kB)
✔ Got commonmark 1.9.1 (i386+x86_64-w64-mingw32) (141.95 kB)
✔ Got dplyr 1.1.4 (i386+x86_64-w64-mingw32) (1.59 MB)
✔ Got scales 1.3.0 (i386+x86_64-w64-mingw32) (721.01 kB)
✔ Downloaded 108 packages (122.46 MB) in 2m 28.2s
ℹ Building hexbin 1.28.1
ℹ Building GenomeInfoDbData 1.2.12
ℹ Building data.table 1.13.4
✔ Installed zlibbioc 1.50.0 (611ms)
✔ Installed yaml 2.3.7 (728ms)
✔ Installed XVector 0.44.0 (892ms)
✔ Installed xtable 1.8-4 (1s)
✔ Installed xfun 0.39 (1.2s)
✔ Installed withr 3.0.0 (1.3s)
✔ Installed waldo 0.4.0 (1.5s)
✔ Installed viridisLite 0.4.2 (1.7s)
✔ Built GenomeInfoDbData 1.2.12 (3.1s)
✔ Installed vctrs 0.6.5 (2.2s)
✔ Installed utf8 1.2.4 (641ms)
✔ Installed UCSC.utils 1.0.0 (439ms)
✔ Installed tinytex 0.45 (588ms)
✔ Installed tidyselect 1.2.1 (560ms)
✔ Installed tidyr 1.3.1 (964ms)
✔ Installed tibble 3.2.1 (1.2s)
✔ Installed teal.widgets 0.4.2 (1.2s)
✔ Installed teal.logger 0.2.0 (1.4s)
✔ Installed teal.data 0.4.0 (1.4s)
✔ Installed teal.code 0.5.0 (1.7s)
✔ Installed sys 3.4.2 (1.8s)
✔ Installed styler 1.10.2 (2.3s)
✔ Installed stringr 1.5.1 (2.5s)
✔ Installed stringi 1.8.4 (2.6s)
✔ Installed SparseArray 1.4.8 (2.7s)
✔ Installed sourcetools 0.1.7-1 (2.7s)
✔ Installed shinyjs 2.1.0 (3.2s)
✔ Built hexbin 1.28.1 (13s)
✔ Installed shinycssloaders 1.0.0 (3.6s)
✔ Installed shiny 1.8.0 (3.9s)
✔ Installed scales 1.3.0 (3.5s)
✔ Installed sass 0.4.9 (3s)
✔ Installed S4Vectors 0.42.1 (3.1s)
✔ Installed S4Arrays 1.4.1 (3s)
✔ Installed rtables 0.6.6 (3.1s)
✔ Installed rprojroot 2.0.4 (2.9s)
✔ Installed rmarkdown 2.23 (3s)
✔ Installed rlang 1.1.3 (2.8s)
✔ Installed rematch2 2.1.2 (576ms)
✔ Installed RColorBrewer 1.1-3 (299ms)
✔ Installed rappdirs 0.3.3 (752ms)
✔ Installed R6 2.5.1 (931ms)
✔ Installed R.utils 2.12.3 (1.2s)
✔ Installed Rcpp 1.0.12 (2.7s)
✔ Installed R.oo 1.25.0 (1.7s)
✔ Installed R.methodsS3 1.8.2 (2s)
✔ Installed R.cache 0.16.0 (2.1s)
✔ Installed purrr 1.0.2 (2.1s)
✔ Installed ps 1.7.1 (2.6s)
✔ Installed promises 1.2.1 (2.8s)
✔ Installed processx 3.7.0 (2.6s)
✔ Installed memoise 2.0.1 (175ms)
✔ Installed praise 1.0.0 (2.9s)
✔ Installed pkgload 1.3.0 (2.9s)
✔ Installed pkgconfig 2.0.3 (3s)
✔ Installed pillar 1.9.0 (3.5s)
✔ Installed openssl 2.2.1 (3.7s)
✔ Installed munsell 0.5.0 (3.7s)
✔ Installed labeling 0.4.3 (694ms)
✔ Installed mime 0.12 (4.3s)
✔ Installed matrixStats 1.3.0 (4.2s)
✔ Installed MatrixGenerics 1.16.0 (4.5s)
✔ Installed magrittr 2.0.3 (4.8s)
✔ Installed logger 0.3.0 (5.2s)
✔ Installed lifecycle 1.0.4 (5.3s)
✔ Installed lazyeval 0.2.2 (5.4s)
✔ Installed later 1.3.2 (5s)
✔ Installed knitr 1.43 (4.4s)
✔ Installed jsonlite 1.8.8 (4.6s)
✔ Installed jquerylib 0.1.4 (5.1s)
✔ Installed isoband 0.2.7 (5.2s)
✔ Installed IRanges 2.38.1 (5.1s)
✔ Installed httr 1.4.7 (5.5s)
✔ Installed httpuv 1.6.14 (5.6s)
✔ Installed htmltools 0.5.8 (5.5s)
✔ Installed highr 0.10 (4.9s)
✔ Installed hexbin 1.28.1 (4.8s)
✔ Installed gtable 0.3.4 (4.9s)
✔ Installed glue 1.7.0 (4.8s)
✔ Installed ggplot2 3.4.4 (5.2s)
✔ Installed GenomicRanges 1.56.1 (5.3s)
✔ Installed GenomeInfoDbData 1.2.12 (5.5s)
✔ Installed GenomeInfoDb 1.40.1 (5.4s)
✔ Installed generics 0.1.3 (5.2s)
✔ Installed fs 1.6.3 (5.1s)
✔ Installed formatters 0.5.5 (5.1s)
✔ Installed fontawesome 0.5.2 (4.5s)
✔ Installed fastmap 1.1.1 (4.4s)
✔ Installed farver 2.1.1 (4.7s)
✔ Installed fansi 1.0.6 (4.6s)
✔ Installed evaluate 0.21 (4.9s)
✔ Installed ellipsis 0.3.2 (5s)
✔ Installed dplyr 1.1.4 (4.9s)
✔ Installed digest 0.6.35 (4.8s)
✔ Installed diffobj 0.3.5 (5.1s)
✔ Installed desc 1.4.2 (4.9s)
✔ Built data.table 1.13.4 (45s)
✔ Installed DelayedArray 0.30.1 (5.3s)
✔ Installed curl 5.2.2 (4.8s)
✔ Installed crayon 1.5.3 (4.7s)
✔ Installed commonmark 1.9.1 (4.5s)
✔ Installed colorspace 2.1-0 (4.3s)
✔ Installed cli 3.6.2 (4.1s)
✔ Installed checkmate 2.3.1 (4.2s)
✔ Installed callr 3.7.2 (4s)
✔ Installed cachem 1.0.8 (3.7s)
✔ Installed brio 1.1.3 (2.9s)
ℹ Building testthat 3.1.5
✔ Installed data.table 1.13.4 (3.3s)
✔ Installed bslib 0.6.2 (4.5s)
✔ Installed BiocGenerics 0.50.0 (606ms)
✔ Installed BiocBaseUtils 1.6.0 (617ms)
✔ Installed SummarizedExperiment 1.34.0 (Bioconductor) (623ms)
✔ Installed MultiAssayExperiment 1.30.3 (Bioconductor) (795ms)
✔ Installed base64enc 0.1-3 (624ms)
ℹ Building htmlwidgets 1.5.3
✔ Installed Biobase 2.64.0 (1.5s)
ℹ Building crosstalk 1.1.0.1
✔ Installed backports 1.4.1 (185ms)
✔ Installed askpass 1.2.0 (591ms)
✔ Installed abind 1.4-5 (375ms)
✔ Installed anytime 0.3.9 (1.5s)
ℹ Building shinyWidgets 0.8.0
✔ Built htmlwidgets 1.5.3 (9.1s)
✔ Installed htmlwidgets 1.5.3 (216ms)
✔ Built crosstalk 1.1.0.1 (9.1s)
✔ Installed crosstalk 1.1.0.1 (286ms)
ℹ Building plotly 4.9.2.2
✔ Built shinyWidgets 0.8.0 (29.4s)
✔ Installed shinyWidgets 0.8.0 (1.1s)
✔ Built plotly 4.9.2.2 (31.8s)
✔ Installed plotly 4.9.2.2 (469ms)
✔ Built testthat 3.1.5 (49.2s)
✔ Installed testthat 3.1.5 (388ms)
── R CMD build ─────────────────────────────────────────────────
✔ checking for file 'C:\Rprojects\teal.slice/DESCRIPTION'
─ preparing 'teal.slice': (9.6s)
✔ checking DESCRIPTION meta-information ...
─ installing the package to build vignettes (1.1s)
✔ creating vignettes (14.5s)
─ checking for LF line-endings in source and make files and shell scripts (2.2s)
─ checking for empty or unneeded directories
Removed empty directory 'teal.slice/tests/testthat/_snaps'
Omitted 'LazyData' from DESCRIPTION
─ building 'teal.slice_0.5.1.9011.tar.gz'
── R CMD check ─────────────────────────────────────────────────
─ using log directory 'C:/Users/kosinsm4/AppData/Local/Temp/Rtmpo7PFaf/file2a64423d4bd9/teal.slice.Rcheck' (448ms)
─ using R version 4.4.0 (2024-04-24 ucrt)
─ using platform: x86_64-w64-mingw32
─ R was compiled by
gcc.exe (GCC) 13.2.0
GNU Fortran (GCC) 13.2.0
─ running under: Windows 11 x64 (build 22621)
─ using session charset: UTF-8
✔ checking for file 'teal.slice/DESCRIPTION' ...
─ checking extension type ... Package
─ this is package 'teal.slice' version '0.5.1.9011'
─ package encoding: UTF-8
✔ checking package namespace information ...
✔ checking package dependencies (1.1s)
✔ checking if this is a source package ...
✔ checking if there is a namespace
✔ checking for executable files (4.6s)
✔ checking for hidden files and directories ...
✔ checking for portable file names
✔ checking whether package 'teal.slice' can be installed (8.1s)
✔ checking installed package size (919ms)
✔ checking package directory
✔ checking 'build' directory ...
✔ checking DESCRIPTION meta-information ...
✔ checking top-level files
✔ checking for left-over files ...
✔ checking index information ...
✔ checking package subdirectories (584ms)
✔ checking code files for non-ASCII characters ...
✔ checking R files for syntax errors ...
✔ checking whether the package can be loaded (555ms)
✔ checking whether the package can be loaded with stated dependencies (447ms)
✔ checking whether the package can be unloaded cleanly (440ms)
✔ checking whether the namespace can be loaded with stated dependencies (442ms)
✔ checking whether the namespace can be unloaded cleanly (664ms)
✔ checking loading without being on the library search path (750ms)
✔ checking whether startup messages can be suppressed (1.2s)
✔ checking dependencies in R code (5s)
✔ checking S3 generic/method consistency (670ms)
✔ checking replacement functions (442ms)
✔ checking foreign function calls (692ms)
✔ checking R code for possible problems (2.6s)
✔ checking Rd files (1.3s)
✔ checking Rd metadata ...
✔ checking Rd cross-references (666ms)
✔ checking for missing documentation entries (558ms)
✔ checking for code/documentation mismatches (1.7s)
✔ checking Rd \usage sections (1.1s)
✔ checking Rd contents ...
✔ checking for unstated dependencies in examples (1.1s)
✔ checking installed files from 'inst/doc' ...
✔ checking files in 'vignettes' ...
✔ checking examples (8.9s)
✔ checking for unstated dependencies in 'tests' ...
─ checking tests ...
✔ Running 'testthat.R' (27.1s)
✔ checking for unstated dependencies in vignettes (526ms)
✔ checking package vignettes ...
✔ checking re-building of vignette outputs (6.6s)
✔ checking PDF version of manual (14.6s) |
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