From 4b73d5bace57f36bb3a7623a6ff7f03fe86b1836 Mon Sep 17 00:00:00 2001 From: Ilona Mattila <134276664+ilona-m@users.noreply.github.com> Date: Tue, 22 Aug 2023 14:06:40 +0300 Subject: [PATCH] UPD: Sw and hw recommendations for TMS neuronavigation --- .../source/user_guide/user_guide.md | 67 ++++++++++--------- 1 file changed, 35 insertions(+), 32 deletions(-) diff --git a/edit_documentation_here/source/user_guide/user_guide.md b/edit_documentation_here/source/user_guide/user_guide.md index fc53d48..ef9a2f0 100644 --- a/edit_documentation_here/source/user_guide/user_guide.md +++ b/edit_documentation_here/source/user_guide/user_guide.md @@ -154,6 +154,7 @@ systems: - Apple macOS +However, Windows offers the most stable performance and the easiest setup. The performance of InVesalius depends mainly on the number of reconstructed slices (images offered by the software), the amount of random access memory (RAM) available, the processor clock rate & @@ -166,7 +167,7 @@ memory, it can open about 300 slices with a resolution of 512x512 pixels. With 4 GB of memory, around 1000 images can be opened simultaneously at the same resolution. -#### Minimum Settings +#### Minimum Computer Settings - 32-bit Operating System @@ -180,17 +181,17 @@ simultaneously at the same resolution. - Video resolution of 1024x768 pixels -#### Recommended Settings +#### Recommended Computer Settings - 64-bit Operating System -- Intel Core 2 Duo processor or equivalent 2.5 GHz processor +- Intel i7 or equivalent processor -- 8 GB of RAM +- 16 GB of RAM - 20 GB available hard disk space -- NVidia or ATI graphics card with 128 MB of memory +- Geforce or AMD or Quadro (P2000 equivalent or superior) graphics card - Video resolution of 1920x1080 pixels @@ -200,40 +201,42 @@ The recommended hardware components for navigated TMS users are listed below. InVesalius supports multiple different tracking devices, but using NDI cameras (either Vega or Lyra) is recommended. -To read more about which tracking a device to choose, +To read more about which tracking device to choose, please check the [tracking devices wiki page](https://github.com/invesalius/invesalius3/wiki/Which-tracking-device-to-choose). +In addition to the components below, [TMS accessories made by Brainbox](https://www.brainbox.shop/categories/brainsight-accs/1938652000002129022) +are also compatible with InVesalius. + + +| **Part** | **Requirements** | **Information** | +|--------------------------------------|-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|-----------------------------------------------------------------------------------------------------------------------------------------------------------------| +| TMS – Neuronavigation Trigger Cables | [BNCT shape adapter](https://www.amazon.de/-/en/Shape-Double-Female-Coaxial-Adapter/dp/B00L9X74WO/ref=sr_1_6?crid=2PJP0S4XSRNUW&keywords=bnc+splitter+cable&qid=1688046287&sprefix=bnc+splitter+cable%2Caps%2C275&sr=8-6) | The trigger from TMS is connected to BNC adapter, which connects to BNC to squared pins, which connect to jumper wires, which connect to the USB trigger cable. | +| | [2 x BNC to squared pins](https://fi.farnell.com/hirschmann-testmeasurement/933844001/test-lead-1-2m-60v/dp/4017468?st=bnc%20pin) | | +| | [Trigger cable (USB) - USB to TTL -PL2303HX](https://www.amazon.de/-/en/Candeon-PL2303HX-Upgrade-Converter-Download/dp/B08XXXXZRZ/ref=sr_1_19?crid=12YYDRV8BDPR8&keywords=USB+TTL+cable&qid=1688045214&sprefix=usb+ttl+c%2Caps%2C313&sr=8-19) | | +| | [4 x Jumper wires, 100 mm long or shorter](https://www.amazon.de/-/en/Bestlus-Breadboard-Exclusive-Bridges-Raspberry/dp/B09H2TRZHB/ref=sr_1_2?crid=2DOXQMSMQTFAG&keywords=arduino+cables+100mm&qid=1688048428&sprefix=arduino+cables+100mm%2Caps%2C271&sr=8-2) | | +| Tracking camera | [Polaris Vega ST Position Sensor, EPV, PL, CFR008](https://www.ndigital.com/optical-measurement-technology/polaris-vega/) | | +| | Polaris Vega PoE Midspan Power Supply 55 VDC 36W, 802.3 at compliant | | +| | Cable Assy - Ethernet 3.0 CAT 6 RJ45 to RJ45 double shielded | | +| | Polaris Vega Tool Kit, Passive | | +| | Camera stand | The stand should offer possibility to move the camera around. Can be mounted in the wall, or a ceiling, or on a movable stand. | +| Probe | 3D models provided by Renan or Aalto, | ROM file required. | +| | OR the NDI toolkit probe, | | +| | OR one existing from another navigations software. | | +| Coil marker | Marker for the coils with attachment (a 3D model provided by Renan), | | +| | OR a clip mount designed by Renan. | | +| Head marker | Head marker (a 3D model provided by Ana or Renan), | Attach the marker using a headband or using the clip to an EPI safety glasses: Example here. | +| | OR a Polaris Tool Kit marker. | | +| Pedal | [Bewinner USB Triple Foot Pedal](https://www.amazon.de/-/en/gp/product/B09ZR7FV3R/ref=ox_sc_act_title_3?smid=A2KREUBK79VF64&th=1) | | +| | [USB Extension cable 3 m](https://www.amazon.de/-/en/gp/product/B09GVGFBG5/ref=ox_sc_act_title_2?smid=A3QP6MATKOCSJT&th=1) | | +| | [4-Port USB 3.0 Hub](https://www.amazon.de/-/en/3-0-Hub-MacBook-Windows-Ultrabooks-Compatible/dp/B00Y211AFM/ref=sr_1_6?crid=1YDVTJXIW4HZI&keywords=usb+hub&qid=1692631216&refinements=p_72%3A419117031&rnid=419116031&sprefix=usb+hu%2Caps%2C195&sr=8-6) | | + -**The recommended components** - -| The device | Part | Quantity | Driver | -|------------------|----------------------------------------------------------------------|----------|-----------------------------------------------------------| -| Pedal | TBD | 1 | | -| NDI Polaris Vega | Polaris Vega ST Position Sensor | 1 | Provided by NDI | -| | Polaris Vega PoE Midspan Power Supply 55 VDC 36W, 802.3 at compliant | 1 | | -| | Cable Assy - Ethernet 3.0 CAT 6 RJ45 to RJ45 double shielded | 1 | | -| | Polaris Vega Tool Kit, Passive | 1 | | -| | Camera stand, TBD | 1 | | -| Trigger cables | BNCT shape adapter | 2 | | -| | Trigger cable (USB) - USB to TTL -PL2303HX | 1 | PL-2303HX-Edition (Rev D) USB to Serial Bridge Controller | -| | BNC to squared pins | 2 | | -| | Jumper wires, 100 mm long or smaller | 4 | | - -**Links to buy the components** - -| Part | Where to buy | -|--------------------------------------------|-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------| -| Polaris Vega ST Position Sensor | [Northern Digital Inc](https://www.ndigital.com/optical-measurement-technology/polaris-vega/) | -| BNCT shape adapter | [Amazon (DE)](https://www.amazon.de/-/en/Shape-Double-Female-Coaxial-Adapter/dp/B00L9X74WO/ref=sr_1_6?crid=2PJP0S4XSRNUW&keywords=bnc+splitter+cable&qid=1688046287&sprefix=bnc+splitter+cable%2Caps%2C275&sr=8-6) | -| Trigger cable (USB) - USB to TTL -PL2303HX | [Amazon (DE)](https://www.amazon.de/-/en/Candeon-PL2303HX-Upgrade-Converter-Download/dp/B08XXXXZRZ/ref=sr_1_19?crid=12YYDRV8BDPR8&keywords=USB+TTL+cable&qid=1688045214&sprefix=usb+ttl+c%2Caps%2C313&sr=8-19) | -| BNC to squared pins | [Farnell Oy](https://fi.farnell.com/hirschmann-testmeasurement/933844001/test-lead-1-2m-60v/dp/4017468?st=bnc%20pin) | -| Jumper wires, 100 mm long or smaller | [Amazon (DE)](https://www.amazon.de/-/en/Bestlus-Breadboard-Exclusive-Bridges-Raspberry/dp/B09H2TRZHB/ref=sr_1_2?crid=2DOXQMSMQTFAG&keywords=arduino+cables+100mm&qid=1688048428&sprefix=arduino+cables+100mm%2Caps%2C271&sr=8-2) | ## Installation To download InVesalius, visit one of the following sites: -* [Gov.br](https://www.cti.gov.br/invesalius) -* [InVesalius GitHub](http://invesalius.github.io) +* [InVesalius GitHub](http://invesalius.github.io), +* [Gov.br](https://www.cti.gov.br/invesalius). ### MS-Windows