From 3a57580d0b720f2ed51d3a32c81cdaf38d8bc5cb Mon Sep 17 00:00:00 2001
From: Jared Andrews <jared.andrews07@gmail.com>
Date: Mon, 2 Dec 2024 13:47:11 -0600
Subject: [PATCH] update changelog, add paper to app

---
 CHANGELOG.md                       | 14 ++++++++++++++
 pyproject.toml                     |  6 +++++-
 strprofiler/shiny_app/shiny_app.py |  7 +++++++
 3 files changed, 26 insertions(+), 1 deletion(-)

diff --git a/CHANGELOG.md b/CHANGELOG.md
index ef42c08..d2e15d3 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -1,5 +1,19 @@
 # Changelog
 
+## v0.4.2
+
+**Release date: 12/02/2024**
+
+ - Add links to paper in app, README, etc.
+ - Minor documentation fixes.
+
+## v0.4.1
+
+**Release date: 11/16/2024**
+
+ - Improved error handling for edge cases and malformed inputs - [#36](https://github.com/j-andrews7/STRprofiler/issues/36), - [#35](https://github.com/j-andrews7/STRprofiler/issues/35)
+ - Add docs and pypi links to app - [#38](https://github.com/j-andrews7/STRprofiler/issues/38)
+
 ## v0.4.0
 
 **Release date: 09/30/2024**
diff --git a/pyproject.toml b/pyproject.toml
index e66ee14..4c0b1ce 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -1,11 +1,12 @@
 [tool.poetry]
 name = "strprofiler"
-version = "0.4.1"
+version = "0.4.2"
 description = "A python package, CLI tool, and Shiny application to compare short tandem repeat (STR) profiles."
 authors = ["Jared Andrews <jared.andrews07@gmail.com>",
            "Mike Lloyd <mike.lloyd@jax.org>"]
 license = "MIT"
 repository = "https://github.com/j-andrews7/strprofiler"
+documentation = "https://strprofiler.readthedocs.io/en/latest/"
 readme = "README.md"
 
 [tool.poetry.dependencies]
@@ -23,6 +24,9 @@ flatten-json = "^0.1.14"
 
 [tool.poetry.dev-dependencies]
 
+[tool.poetry.urls]
+"Paper" = "https://doi.org/10.1093/bioinformatics/btae713"
+
 [tool.poetry.scripts]
 strprofiler = 'strprofiler.cli:cli'
 
diff --git a/strprofiler/shiny_app/shiny_app.py b/strprofiler/shiny_app/shiny_app.py
index 9538cae..71ecb04 100644
--- a/strprofiler/shiny_app/shiny_app.py
+++ b/strprofiler/shiny_app/shiny_app.py
@@ -501,6 +501,13 @@ def create_app(db=None):
                     target="_blank",
                 ),
             ),
+            ui.nav_control(
+                ui.a(
+                    ui.p("Paper"),
+                    href="https://doi.org/10.1093/bioinformatics/btae713",
+                    target="_blank",
+                ),
+            ),
             ui.nav_control(
                 ui.a(
                     ui.span(ui.p("Bug Reports")),