Implement Rotation Transforms (#119)

* Update workflows (#109)

* Delete target directory

* Update build.yml

* Update JavaDoc.

* Added coalesce and dropZero methods to all sparse COO tensor objects.

* Updated toString methods for all tensor arrays types.

Sparse arrays now use abbreviated arrays when printing indices/pointers.

All arrays now only call method from PrintOptions once to ensure no unexpected issues can arise from PrintOptions being updated asynchronously.

* Simplified naming conventions for operations.

* Updated javadoc for dense matrices.

* Fixed issue with matrix market write for coordinate matrices.

Updated sparse toString methods for all sparse arrays.

Added tests.

* Added generic ring/semiring tensors.

Added dense and sparse vector, matrix, and tensors which use a generic ring or semiring as the elements.

* Tensor inheritance (#115)

* Updated inheritance of tensors.

- All ring tensors now inherit from their equivalent semiring tensors.
- All field tensors now inherit from their equivalent ring tensors.
- Added tests for Complex64 numbers.

* Added Tests

- Removed redundant transpose classes.

* Fixed Javadoc.

* Remove duplicated code.

* Added tests.

- Fixed bugs that caused failing tests.

* Added tests.

- Fixed bugs that caused failing tests.

* Added tests.

- Fixed bugs which failing tests.

* Fix for norms.

- Updated and fixed matrix and vector norms
- Changes to norms are reflected in the Condition.java for computing condition numbers.

* Added balancing decomposition

* Small fixes.

* Remove debug main method.

* Update Javadoc.

* All matrix object now use PrettyPrint

* Refactor ArrayUtils.java

- Unneeded methods removed.
- Many methods moved to ArrayBuilder, ArrayConversions or ArrayJoiner utility classes.
- Consolidated/Generified methods where it made sense.

* Refactor of random array/tensor generation.

- Added distributions which can be randomly sampled for improved random array creation.

* Update README.md

* Add rotation transformations

* Add rotation transformations

* Add rotation transformations

* Add rotation transformations

* Update JavaDoc.

* Added coalesce and dropZero methods to all sparse COO tensor objects.

* Updated toString methods for all tensor arrays types.

Sparse arrays now use abbreviated arrays when printing indices/pointers.

All arrays now only call method from PrintOptions once to ensure no unexpected issues can arise from PrintOptions being updated asynchronously.

* Simplified naming conventions for operations.

* Updated javadoc for dense matrices.

* Fixed issue with matrix market write for coordinate matrices.

Updated sparse toString methods for all sparse arrays.

Added tests.

* Added generic ring/semiring tensors.

Added dense and sparse vector, matrix, and tensors which use a generic ring or semiring as the elements.

* Tensor inheritance (#115)

* Updated inheritance of tensors.

- All ring tensors now inherit from their equivalent semiring tensors.
- All field tensors now inherit from their equivalent ring tensors.
- Added tests for Complex64 numbers.

* Added Tests

- Removed redundant transpose classes.

* Fixed Javadoc.

* Remove duplicated code.

* Added tests.

- Fixed bugs that caused failing tests.

* Added tests.

- Fixed bugs that caused failing tests.

* Added tests.

- Fixed bugs which failing tests.

* Fix for norms.

- Updated and fixed matrix and vector norms
- Changes to norms are reflected in the Condition.java for computing condition numbers.

* Added balancing decomposition

* Small fixes.

* Remove debug main method.

* Update Javadoc.

* All matrix object now use PrettyPrint

* Refactor ArrayUtils.java

- Unneeded methods removed.
- Many methods moved to ArrayBuilder, ArrayConversions or ArrayJoiner utility classes.
- Consolidated/Generified methods where it made sense.

* Refactor of random array/tensor generation.

- Added distributions which can be randomly sampled for improved random array creation.

* Add rotation transformations

* Add rotation transformations

* Add rotation transformations

* Add rotation transformations

* Fixed un-capitalized Hermitian

Author: jacobdwatters

docs/allclasses-index.html

@@ -1,11 +1,11 @@
 <!DOCTYPE HTML>
 <html lang="en">
 <head>
-<!-- Generated by javadoc (23) on Sat Jan 25 00:59:38 MST 2025 -->
+<!-- Generated by javadoc (23) on Sun Jan 26 23:57:13 MST 2025 -->
 <title>Deprecated List</title>
 <meta name="viewport" content="width=device-width, initial-scale=1">
 <meta http-equiv="Content-Type" content="text/html; charset=utf-8">
-<meta name="dc.created" content="2025-01-25">
+<meta name="dc.created" content="2025-01-26">
 <meta name="description" content="deprecated elements">
 <meta name="generator" content="javadoc/DeprecatedListWriter">
 <link rel="stylesheet" type="text/css" href="resource-files/jquery-ui.min.css" title="Style">
@@ -28,7 +28,7 @@
 <div class="nav-menu-button"><button id="navbar-toggle-button" aria-controls="navbar-top" aria-expanded="false" aria-label="Toggle navigation links"><span class="nav-bar-toggle-icon">&nbsp;</span><span class="nav-bar-toggle-icon">&nbsp;</span><span class="nav-bar-toggle-icon">&nbsp;</span></button></div>
 <div class="skip-nav"><a href="#skip-navbar-top" title="Skip navigation links">Skip navigation links</a></div>
 <ul id="navbar-top-firstrow" class="nav-list" title="Navigation">
-<li><a href="flag4j/module-summary.html">Module</a></li>
+<li><a href="index.html">Overview</a></li>
 <li><a href="overview-tree.html">Tree</a></li>
 <li class="nav-bar-cell1-rev">Deprecated</li>
 <li><a href="index-files/index-1.html">Index</a></li>
@@ -65,9 +65,9 @@ <h2 title="Contents">Contents</h2>
 <div class="summary-table two-column-summary">
 <div class="table-header col-first">Method</div>
 <div class="table-header col-last">Description</div>
-<div class="col-summary-item-name even-row-color"><a href="flag4j/org/flag4j/linalg/TensorInvert.html#inv(org.flag4j.arrays.dense.CTensor,int)">org.flag4j.linalg.TensorInvert.inv<wbr>(CTensor, int)</a></div>
+<div class="col-summary-item-name even-row-color"><a href="org/flag4j/linalg/TensorInvert.html#inv(org.flag4j.arrays.dense.CTensor,int)">org.flag4j.linalg.TensorInvert.inv<wbr>(CTensor, int)</a></div>
 <div class="col-last even-row-color"></div>
-<div class="col-summary-item-name odd-row-color"><a href="flag4j/org/flag4j/linalg/TensorInvert.html#inv(org.flag4j.arrays.dense.Tensor,int)">org.flag4j.linalg.TensorInvert.inv<wbr>(Tensor, int)</a></div>
+<div class="col-summary-item-name odd-row-color"><a href="org/flag4j/linalg/TensorInvert.html#inv(org.flag4j.arrays.dense.Tensor,int)">org.flag4j.linalg.TensorInvert.inv<wbr>(Tensor, int)</a></div>
 <div class="col-last odd-row-color"></div>
 </div>
 </div>

docs/allpackages-index.html

@@ -1,4 +1,3 @@
-module:flag4j
 org.flag4j.algebraic_structures
 org.flag4j.arrays
 org.flag4j.arrays.backend
@@ -23,7 +22,6 @@ org.flag4j.linalg.decompositions.schur
 org.flag4j.linalg.decompositions.svd
 org.flag4j.linalg.decompositions.unitary
 org.flag4j.linalg.ops
-org.flag4j.linalg.ops.common
 org.flag4j.linalg.ops.common.complex
 org.flag4j.linalg.ops.common.field_ops
 org.flag4j.linalg.ops.common.real
@@ -62,5 +60,6 @@ org.flag4j.linalg.solvers.exact.triangular
 org.flag4j.linalg.solvers.lstsq
 org.flag4j.linalg.transformations
 org.flag4j.rng
+org.flag4j.rng.distributions
 org.flag4j.util
 org.flag4j.util.exceptions