From 6b0685798b69a517c0cbb6389caef985da473b7e Mon Sep 17 00:00:00 2001 From: "Akeret, Joel" Date: Wed, 22 Nov 2017 19:50:10 +0100 Subject: [PATCH 1/7] requirements for binder --- requirements.txt | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) diff --git a/requirements.txt b/requirements.txt index b5da9fa..973aba3 100644 --- a/requirements.txt +++ b/requirements.txt @@ -1,4 +1,6 @@ click numpy Pillow -tensorflow>=1.0.0 \ No newline at end of file +tensorflow>=1.0.0 +matplotlib +-e https://github.com/jakeret/tf_unet.git \ No newline at end of file From 5a7993cdc9bf51fae9123d49fae959501d254172 Mon Sep 17 00:00:00 2001 From: "Akeret, Joel" Date: Wed, 22 Nov 2017 19:51:34 +0100 Subject: [PATCH 2/7] requirements for binder --- requirements.txt | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/requirements.txt b/requirements.txt index 973aba3..68bc4a0 100644 --- a/requirements.txt +++ b/requirements.txt @@ -3,4 +3,4 @@ numpy Pillow tensorflow>=1.0.0 matplotlib --e https://github.com/jakeret/tf_unet.git \ No newline at end of file +-e git://github.com/jakeret/tf_unet.git \ No newline at end of file From ec41518ec6d43a5418889c35301de7fb6d70e0c1 Mon Sep 17 00:00:00 2001 From: "Akeret, Joel" Date: Wed, 22 Nov 2017 19:55:19 +0100 Subject: [PATCH 3/7] requirements for binder --- requirements.txt | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/requirements.txt b/requirements.txt index 68bc4a0..d855d5c 100644 --- a/requirements.txt +++ b/requirements.txt @@ -3,4 +3,4 @@ numpy Pillow tensorflow>=1.0.0 matplotlib --e git://github.com/jakeret/tf_unet.git \ No newline at end of file +-e git+https://github.com/jakeret/tf_unet.git#egg=tf_unet \ No newline at end of file From 1a959a65e0a9df371ace3824d66da5143259be4a Mon Sep 17 00:00:00 2001 From: "Akeret, Joel" Date: Wed, 22 Nov 2017 20:22:32 +0100 Subject: [PATCH 4/7] requirements for binder --- README.rst | 3 +++ 1 file changed, 3 insertions(+) diff --git a/README.rst b/README.rst index 3c16752..e9d90b3 100644 --- a/README.rst +++ b/README.rst @@ -12,6 +12,9 @@ Tensorflow Unet .. image:: https://img.shields.io/badge/ascl-1611.002-blue.svg?colorB=262255 :target: http://ascl.net/1611.002 +.. image:: https://mybinder.org/badge.svg + :target: https://mybinder.org/v2/gh/jakeret/tf_unet/binder?filepath=demo%2Fdemo_toy_problem.ipynb + This is a generic **U-Net** implementation as proposed by `Ronneberger et al. `_ developed with **Tensorflow**. The code has been developed and used for `Radio Frequency Interference mitigation using deep convolutional neural networks `_ . From 7cc612763c4fe7d28328a831e77c734f3d9b6153 Mon Sep 17 00:00:00 2001 From: "Akeret, Joel" Date: Thu, 23 Nov 2017 08:23:12 +0100 Subject: [PATCH 5/7] installing package in post build --- postBuild | 4 ++++ requirements.txt | 3 +-- 2 files changed, 5 insertions(+), 2 deletions(-) create mode 100644 postBuild diff --git a/postBuild b/postBuild new file mode 100644 index 0000000..075c464 --- /dev/null +++ b/postBuild @@ -0,0 +1,4 @@ +#!/bin/bash + +# NOTE: this file needs to be executable in order to work. +python setup.py install diff --git a/requirements.txt b/requirements.txt index d855d5c..f93a650 100644 --- a/requirements.txt +++ b/requirements.txt @@ -2,5 +2,4 @@ click numpy Pillow tensorflow>=1.0.0 -matplotlib --e git+https://github.com/jakeret/tf_unet.git#egg=tf_unet \ No newline at end of file +matplotlib \ No newline at end of file From c05cdc0d104780151195e1fd0fe43e010ca82f6b Mon Sep 17 00:00:00 2001 From: "Akeret, Joel" Date: Thu, 23 Nov 2017 08:24:16 +0100 Subject: [PATCH 6/7] installing package in post build --- postBuild | 0 1 file changed, 0 insertions(+), 0 deletions(-) mode change 100644 => 100755 postBuild diff --git a/postBuild b/postBuild old mode 100644 new mode 100755 From 7167c36d370615ad93f26e0dcdd1f814b83fd289 Mon Sep 17 00:00:00 2001 From: "Akeret, Joel" Date: Fri, 15 Dec 2017 13:11:45 +0100 Subject: [PATCH 7/7] readme for demo --- demo/README.rst | 13 +++++++++++++ 1 file changed, 13 insertions(+) create mode 100644 demo/README.rst diff --git a/demo/README.rst b/demo/README.rst new file mode 100644 index 0000000..d91317c --- /dev/null +++ b/demo/README.rst @@ -0,0 +1,13 @@ +============================= +Tensorflow Unet demos +============================= + +.. image:: https://mybinder.org/badge.svg + :target: https://mybinder.org/v2/gh/jakeret/tf_unet/binder?filepath=demo%2Fdemo_toy_problem.ipynb + + + +Here you can find demo Jupyter notebooks for a `toy problem `_ or the `Radio Frequency Interference mitigation `_ discussed in our paper. + + +You can use the binder badge to start an interactive version of the toy problem without having to install anything on your machine.