_pkgdown.yml

url: https://jameel-institute.github.io/daedalus/
template:
  bootstrap: 5
  package: jameelinst.rpkg.theme
# NOTE: development mode is off, consider enabling after next minor version

articles:
- title: Package vignettes and user guides
  navbar: Package vignettes and user guides
  contents:
  - thresholded_response
  - pandemic_costs
  - parameter_uncertainty
  - strategy_comparison
- title: "Model details: Calculating pandemic costs"
  navbar: "Model details: Calculating pandemic costs"
  contents:
  - info_life_value
  - info_edu_value

reference:
  - title: Model function
    desc: Run the DAEDALUS integrated economic-epidemiological model
    contents:
    - daedalus
  - title: Class `<daedalus_country>`
    desc: Represent and access country or territory characteristics
    contents:
    - class_country
  - title: Class `<daedalus_infection>`
    desc: Represent and access infection characteristics
    contents:
    - class_infection
  - title: Class `<daedalus_vaccination>`
    desc: Represent and access vaccine investment scenarios
    contents:
    - class_vaccination
  - title: Class `<daedalus_output>`
    desc: Class to store model output for further processing
    contents:
    - class_daedalus_output
  - title: Model output post-processing
    desc: Functions to process model output to calculate pandemic costs and other characteristics
    contents:
    - get_costs
    - epi_output_helpers
  - title: Package generics
    desc: Generics with methods for package S3 classes
    contents:
    - has_keyword("generics")
  - title: Package data
    desc: Data included with the package
    contents:
    - contains("data")
    - contains("contacts")
    - country_names
    - life_value
    - -has_keyword("generics")
  - title: Model constants
    desc: Useful constant used internally
    contents:
    - has_keyword("model_constant")
    - has_keyword("epi_constant")
    - has_keyword("summary_constants")
    - has_keyword("econ_constant")
  - title: Internal functions
    desc: Functions used internally
    contents:
    - has_keyword("internal")