DESCRIPTION

Package: thesis
Type: Package
Title: Data and functions for systematic botany thesis work
Version: 0.3.2.9006
Author: Jason Ratcliff <jason.ratcliff.515@gmail.com> [aut,cre]
Maintainer: Jason Ratcliff <jason.ratcliff.515@gmail.com>
Description: Data and code for compiling a thesis manuscript. Includes
    functions for importing and parsing herbarium and DNA specimen information,
    distribution mapping, phylogenetic tree annotation, and quantitative trait
    comparisons.
URL: https://github.com/jasonratcliff/thesis
BugReports: https://github.com/jasonratcliff/thesis/issues
Encoding: UTF-8
LazyData: true
SystemRequirements:
    GNU make,
    Quarto command line tools (https://github.com/quarto-dev/quarto-cli).
License: CC BY 4.0 + file LICENSE
VignetteBuilder: knitr
RoxygenNote: 7.3.1
Roxygen: list(markdown = TRUE)
Config/testthat/edition: 3
Depends:
    R (>= 4.0)
Imports:
    Biostrings,
    cowplot,
    dplyr (>= 1.0.0),
    elevatr,
    fs,
    ggmap (>= 3.0.0.9),
    ggmsa,
    ggnewscale,
    ggplot2,
    ggrepel,
    ggridges,
    ggtext,
    ggtree,
    glue,
    grid,
    gtable,
    knitr (>= 1.35),
    magrittr,
    methods,
    msa,
    plyr,
    purrr,
    R6,
    raster,
    readr (>= 2.0.0),
    rgdal,
    rlang,
    rmapshaper,
    scales,
    sf,
    stats,
    stringr,
    tibble,
    tidyr,
    tigris,
    treeio,
    usethis
Suggests:
    ape,
    bookdown,
    broom,
    car,
    commonmark,
    covr,
    devtools,
    DiagrammeR,
    grDevices,
    gridExtra,
    here,
    kableExtra,
    lifecycle,
    lubridate,
    pander,
    pkgdown,
    readxl,
    remotes,
    renv,
    rmarkdown,
    roxygen2 (>= 7.0.0),
    rprojroot,
    rstudioapi,
    shiny,
    testthat (>= 3.1.9),
    tinytex,
    utils,
    whisker,
    withr,
    xaringan
Collate: 
    'data.R'
    'deprec-maps.R'
    'deprec-specimens.R'
    'deprec-themes.R'
    'taxa.R'
    'labels.R'
    'specimens.R'
    'maps.R'
    'msa_wrappers.R'
    'repel.R'
    'thesis-package.R'
    'traits.R'
    'tree_bayes.R'
    'tree_beast.R'
    'tree_data.R'
    'utils-pipe.R'
    'zzz.R'