From 609cc458a216d9ccb191abd047a350f8f848a464 Mon Sep 17 00:00:00 2001 From: Jasper Linthorst Date: Fri, 16 Mar 2018 14:22:18 +0100 Subject: [PATCH] Max allele size if more informative --- reveal/refine.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/reveal/refine.py b/reveal/refine.py index 988b9ae..9dd11cc 100644 --- a/reveal/refine.py +++ b/reveal/refine.py @@ -152,7 +152,7 @@ def refine_bubble(sg,bubble,offsets,paths,**kwargs): source=bubble.source sink=bubble.sink - logging.info("Realigning bubble between <%s> and <%s>, with %s (cum. size %dbp, in nodes=%d)."%(bubble.source,bubble.sink,kwargs['method'],bubble.cumsize,len(bubble.nodes)-2)) + logging.info("Realigning bubble between <%s> and <%s>, with %s (max size %dbp, in nodes=%d)."%(bubble.source,bubble.sink,kwargs['method'],bubble.maxsize,len(bubble.nodes)-2)) if len(bubble.nodes)==3: logging.fatal("Indel bubble, no point realigning.")