.gitignore

# Compiled Object files
*.swp
*.slo
*.lo
*.o
*.obj

# Compiled Dynamic libraries
*.so
*.dylib
*.dll

# Compiled Static libraries
*.lai
*.la
*.a
*.lib

# Executables
*.exe
*.out
*.app
.Rproj.user
*~
Icon*

# API files
html/
docs/api/html/

# Latex files
*.aux
*.fdb_latexmk
*.fls
*.out
*.nav
*.toc
*.snm
*.vrb
*.tex.bak
*.bak
auto/

# R files
.Rproj.user
*.Rout
*.R~
.RData
.Rhistory
*.Rmd.bak
Rplots.pdf

# ADMB build files
src/lib/*.obj
src/build/*
src/gmacs.cpp
src/gmacs.exe
src/gmacs.htp
src/gmacs.obj
src/moltIncrement.cpp

# ADMB standard output files
*.b0*
*.bar
*.cor
*.cov
*.dep
*.ecm
*.eva
gradient.*
*.hes
*.log
*.mc2
*.mcm
*.p0*
*.psv
*.hst
*.par
*.rep
*.r0*
*.std
*_in.ctl
*_in.dat
# Added for MCMC runs
adaptation.csv
unbounded.csv
init.pin
variance
sims