diff --git a/README.Rmd b/README.Rmd index 5a62ef4..1709d66 100644 --- a/README.Rmd +++ b/README.Rmd @@ -282,7 +282,7 @@ plot(template2d, sample = 1) ``` -### Plotting with less or more than two channels +### Plotting It's possible to project the mean coordinates of a third channel's bins onto a two dimensional grid using the colormap function. diff --git a/README.md b/README.md index d0539e4..f2aed73 100644 --- a/README.md +++ b/README.md @@ -23,8 +23,7 @@ - [Multidimensional analysis](#multidimensional-analysis) - [Creating and converting higher dimensional FSFTemplates](#creating-and-converting-higher-dimensional-fsftemplates) - - [Plotting with less or more than two - channels](#plotting-with-less-or-more-than-two-channels) + - [Plotting](#plotting-1) - [Analysing single channels](#analysing-single-channels) @@ -172,14 +171,14 @@ permutest(bd, pairwise = T) ## ## Response: Distances ## Df Sum Sq Mean Sq F N.Perm Pr(>F) -## Groups 2 0.002215 0.0011075 0.3654 999 0.741 +## Groups 2 0.002215 0.0011075 0.3654 999 0.738 ## Residuals 25 0.075777 0.0030311 ## ## Pairwise comparisons: ## (Observed p-value below diagonal, permuted p-value above diagonal) ## control Treatment 1 Treatment 2 -## control 0.98600 0.463 -## Treatment 1 0.98257 0.531 +## control 0.98800 0.457 +## Treatment 1 0.98257 0.508 ## Treatment 2 0.40472 0.45512 ``` @@ -209,11 +208,11 @@ pw.adonis2(distM, term = "treatment", data = metadata, adjust = "BH") ## ====================== ## Adjusted p-values ( BH ) ## ----------------- -## control Treatment 1 : 0.006 +## control Treatment 1 : 0.0105 ## ----------------- -## control Treatment 2 : 0.138 +## control Treatment 2 : 0.141 ## ----------------- -## Treatment 1 Treatment 2 : 0.006 +## Treatment 1 Treatment 2 : 0.009 ``` ### Detection of driving features with t-scores @@ -443,7 +442,7 @@ plot(template2d, sample = 1) -### Plotting with less or more than two channels +### Plotting It’s possible to project the mean coordinates of a third channel’s bins onto a two dimensional grid using the colormap function. diff --git a/README_files/figure-gfm/unnamed-chunk-26-1.png b/README_files/figure-gfm/unnamed-chunk-26-1.png index ab8cbc5..d8e0fdc 100644 Binary files a/README_files/figure-gfm/unnamed-chunk-26-1.png and b/README_files/figure-gfm/unnamed-chunk-26-1.png differ diff --git a/README_files/figure-gfm/unnamed-chunk-6-1.png b/README_files/figure-gfm/unnamed-chunk-6-1.png index b399770..b665b8d 100644 Binary files a/README_files/figure-gfm/unnamed-chunk-6-1.png and b/README_files/figure-gfm/unnamed-chunk-6-1.png differ