rulegraph.svg

<?xml version="1.0" encoding="UTF-8" standalone="no"?>
<!DOCTYPE svg PUBLIC "-//W3C//DTD SVG 1.1//EN"
 "http://www.w3.org/Graphics/SVG/1.1/DTD/svg11.dtd">
<!-- Generated by graphviz version 2.38.0 (20140413.2041)
 -->
<!-- Title: snakemake_dag Pages: 1 -->
<svg width="567pt" height="620pt"
 viewBox="0.00 0.00 566.97 620.00" xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink">
<g id="graph0" class="graph" transform="scale(1 1) rotate(0) translate(4 616)">
<title>snakemake_dag</title>
<polygon fill="white" stroke="none" points="-4,4 -4,-616 562.967,-616 562.967,4 -4,4"/>
<!-- 0 -->
<g id="node1" class="node"><title>0</title>
<path fill="none" stroke="#d85656" stroke-width="2" d="M109.5,-468C109.5,-468 30.5,-468 30.5,-468 24.5,-468 18.5,-462 18.5,-456 18.5,-456 18.5,-444 18.5,-444 18.5,-438 24.5,-432 30.5,-432 30.5,-432 109.5,-432 109.5,-432 115.5,-432 121.5,-438 121.5,-444 121.5,-444 121.5,-456 121.5,-456 121.5,-462 115.5,-468 109.5,-468"/>
<text text-anchor="middle" x="70" y="-447.5" font-family="sans" font-size="10.00">map_hisat2_build</text>
</g>
<!-- 1 -->
<g id="node2" class="node"><title>1</title>
<path fill="none" stroke="#d87556" stroke-width="2" d="M320.5,-396C320.5,-396 241.5,-396 241.5,-396 235.5,-396 229.5,-390 229.5,-384 229.5,-384 229.5,-372 229.5,-372 229.5,-366 235.5,-360 241.5,-360 241.5,-360 320.5,-360 320.5,-360 326.5,-360 332.5,-366 332.5,-372 332.5,-372 332.5,-384 332.5,-384 332.5,-390 326.5,-396 320.5,-396"/>
<text text-anchor="middle" x="281" y="-375.5" font-family="sans" font-size="10.00">map_hisat2_align</text>
</g>
<!-- 0&#45;&gt;1 -->
<g id="edge4" class="edge"><title>0&#45;&gt;1</title>
<path fill="none" stroke="grey" stroke-width="2" d="M121.347,-431.966C150.956,-422.142 188.374,-409.729 219.541,-399.389"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="221.034,-402.582 229.423,-396.111 218.83,-395.938 221.034,-402.582"/>
</g>
<!-- 3 -->
<g id="node4" class="node"><title>3</title>
<path fill="none" stroke="#d8b456" stroke-width="2" d="M517.5,-324C517.5,-324 398.5,-324 398.5,-324 392.5,-324 386.5,-318 386.5,-312 386.5,-312 386.5,-300 386.5,-300 386.5,-294 392.5,-288 398.5,-288 398.5,-288 517.5,-288 517.5,-288 523.5,-288 529.5,-294 529.5,-300 529.5,-300 529.5,-312 529.5,-312 529.5,-318 523.5,-324 517.5,-324"/>
<text text-anchor="middle" x="458" y="-303.5" font-family="sans" font-size="10.00">quant_stringtie_assemble</text>
</g>
<!-- 1&#45;&gt;3 -->
<g id="edge10" class="edge"><title>1&#45;&gt;3</title>
<path fill="none" stroke="grey" stroke-width="2" d="M324.299,-359.876C348.711,-350.222 379.396,-338.087 405.21,-327.878"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="406.83,-331.001 414.842,-324.068 404.255,-324.491 406.83,-331.001"/>
</g>
<!-- 11 -->
<g id="node12" class="node"><title>11</title>
<path fill="none" stroke="#569ad8" stroke-width="2" d="M407.5,-180C407.5,-180 308.5,-180 308.5,-180 302.5,-180 296.5,-174 296.5,-168 296.5,-168 296.5,-156 296.5,-156 296.5,-150 302.5,-144 308.5,-144 308.5,-144 407.5,-144 407.5,-144 413.5,-144 419.5,-150 419.5,-156 419.5,-156 419.5,-168 419.5,-168 419.5,-174 413.5,-180 407.5,-180"/>
<text text-anchor="middle" x="358" y="-159.5" font-family="sans" font-size="10.00">quant_stringtie_quant</text>
</g>
<!-- 1&#45;&gt;11 -->
<g id="edge15" class="edge"><title>1&#45;&gt;11</title>
<path fill="none" stroke="grey" stroke-width="2" d="M287.171,-359.849C300.547,-322.675 332.295,-234.439 348.35,-189.82"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="351.707,-190.827 351.8,-180.232 345.121,-188.457 351.707,-190.827"/>
</g>
<!-- 2 -->
<g id="node3" class="node"><title>2</title>
<path fill="none" stroke="#d89556" stroke-width="2" d="M509.5,-252C509.5,-252 406.5,-252 406.5,-252 400.5,-252 394.5,-246 394.5,-240 394.5,-240 394.5,-228 394.5,-228 394.5,-222 400.5,-216 406.5,-216 406.5,-216 509.5,-216 509.5,-216 515.5,-216 521.5,-222 521.5,-228 521.5,-228 521.5,-240 521.5,-240 521.5,-246 515.5,-252 509.5,-252"/>
<text text-anchor="middle" x="458" y="-231.5" font-family="sans" font-size="10.00">quant_stringtie_merge</text>
</g>
<!-- 2&#45;&gt;11 -->
<g id="edge16" class="edge"><title>2&#45;&gt;11</title>
<path fill="none" stroke="grey" stroke-width="2" d="M433.537,-215.876C420.704,-206.893 404.804,-195.763 390.906,-186.034"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="392.756,-183.057 382.557,-180.19 388.742,-188.792 392.756,-183.057"/>
</g>
<!-- 3&#45;&gt;2 -->
<g id="edge8" class="edge"><title>3&#45;&gt;2</title>
<path fill="none" stroke="grey" stroke-width="2" d="M458,-287.697C458,-279.983 458,-270.712 458,-262.112"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="461.5,-262.104 458,-252.104 454.5,-262.104 461.5,-262.104"/>
</g>
<!-- 4 -->
<g id="node5" class="node"><title>4</title>
<path fill="none" stroke="#d6d856" stroke-width="2" d="M418,-540C418,-540 302,-540 302,-540 296,-540 290,-534 290,-528 290,-528 290,-516 290,-516 290,-510 296,-504 302,-504 302,-504 418,-504 418,-504 424,-504 430,-510 430,-516 430,-516 430,-528 430,-528 430,-534 424,-540 418,-540"/>
<text text-anchor="middle" x="360" y="-519.5" font-family="sans" font-size="10.00">raw_link_reference_fasta</text>
</g>
<!-- 4&#45;&gt;0 -->
<g id="edge3" class="edge"><title>4&#45;&gt;0</title>
<path fill="none" stroke="grey" stroke-width="2" d="M289.827,-505.778C246.569,-496.173 189.751,-483.163 131.42,-468.312"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="132.222,-464.904 121.667,-465.815 130.486,-471.686 132.222,-464.904"/>
</g>
<!-- 4&#45;&gt;1 -->
<g id="edge6" class="edge"><title>4&#45;&gt;1</title>
<path fill="none" stroke="grey" stroke-width="2" d="M350.471,-503.871C336.829,-479.35 311.616,-434.032 295.609,-405.259"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="298.483,-403.226 290.563,-396.189 292.366,-406.63 298.483,-403.226"/>
</g>
<!-- 4&#45;&gt;3 -->
<g id="edge11" class="edge"><title>4&#45;&gt;3</title>
<path fill="none" stroke="grey" stroke-width="2" d="M367.854,-503.849C384.914,-466.597 425.455,-378.067 445.847,-333.539"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="449.127,-334.782 450.109,-324.232 442.763,-331.867 449.127,-334.782"/>
</g>
<!-- 4&#45;&gt;11 -->
<g id="edge17" class="edge"><title>4&#45;&gt;11</title>
<path fill="none" stroke="grey" stroke-width="2" d="M359.904,-503.733C359.582,-446.194 358.546,-260.658 358.153,-190.351"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="361.651,-190.074 358.095,-180.094 354.652,-190.113 361.651,-190.074"/>
</g>
<!-- 5 -->
<g id="node6" class="node"><title>5</title>
<path fill="none" stroke="#b6d856" stroke-width="2" d="M388,-612C388,-612 284,-612 284,-612 278,-612 272,-606 272,-600 272,-600 272,-588 272,-588 272,-582 278,-576 284,-576 284,-576 388,-576 388,-576 394,-576 400,-582 400,-588 400,-588 400,-600 400,-600 400,-606 394,-612 388,-612"/>
<text text-anchor="middle" x="336" y="-591.5" font-family="sans" font-size="10.00">raw_link_reference_gtf</text>
</g>
<!-- 5&#45;&gt;2 -->
<g id="edge7" class="edge"><title>5&#45;&gt;2</title>
<path fill="none" stroke="grey" stroke-width="2" d="M400.212,-580.544C465.777,-563.659 558,-526.49 558,-451 558,-451 558,-451 558,-377 558,-336.553 561.867,-321.363 539,-288 530.509,-275.611 518.073,-265.412 505.483,-257.385"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="507.166,-254.313 496.789,-252.174 503.567,-260.317 507.166,-254.313"/>
</g>
<!-- 5&#45;&gt;3 -->
<g id="edge9" class="edge"><title>5&#45;&gt;3</title>
<path fill="none" stroke="grey" stroke-width="2" d="M393.042,-575.964C410.582,-567.884 428.116,-556.31 439,-540 481.428,-476.422 471.713,-380.288 463.613,-333.907"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="467.042,-333.206 461.775,-324.013 460.16,-334.484 467.042,-333.206"/>
</g>
<!-- 6 -->
<g id="node7" class="node"><title>6</title>
<path fill="none" stroke="#78d856" stroke-width="2" d="M259.5,-540C259.5,-540 170.5,-540 170.5,-540 164.5,-540 158.5,-534 158.5,-528 158.5,-528 158.5,-516 158.5,-516 158.5,-510 164.5,-504 170.5,-504 170.5,-504 259.5,-504 259.5,-504 265.5,-504 271.5,-510 271.5,-516 271.5,-516 271.5,-528 271.5,-528 271.5,-534 265.5,-540 259.5,-540"/>
<text text-anchor="middle" x="215" y="-519.5" font-family="sans" font-size="10.00">map_extract_exons</text>
</g>
<!-- 5&#45;&gt;6 -->
<g id="edge12" class="edge"><title>5&#45;&gt;6</title>
<path fill="none" stroke="grey" stroke-width="2" d="M306.4,-575.876C290.433,-566.639 270.54,-555.131 253.394,-545.212"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="255.122,-542.168 244.714,-540.19 251.617,-548.227 255.122,-542.168"/>
</g>
<!-- 7 -->
<g id="node8" class="node"><title>7</title>
<path fill="none" stroke="#56d87b" stroke-width="2" d="M128,-540C128,-540 12,-540 12,-540 6,-540 0,-534 0,-528 0,-528 0,-516 0,-516 0,-510 6,-504 12,-504 12,-504 128,-504 128,-504 134,-504 140,-510 140,-516 140,-516 140,-528 140,-528 140,-534 134,-540 128,-540"/>
<text text-anchor="middle" x="70" y="-519.5" font-family="sans" font-size="10.00">map_extract_splice_sites</text>
</g>
<!-- 5&#45;&gt;7 -->
<g id="edge13" class="edge"><title>5&#45;&gt;7</title>
<path fill="none" stroke="grey" stroke-width="2" d="M271.948,-576.144C233.603,-566.053 184.689,-553.181 144.605,-542.633"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="145.442,-539.234 134.881,-540.074 143.661,-546.004 145.442,-539.234"/>
</g>
<!-- 6&#45;&gt;0 -->
<g id="edge1" class="edge"><title>6&#45;&gt;0</title>
<path fill="none" stroke="grey" stroke-width="2" d="M179.529,-503.876C159.883,-494.392 135.278,-482.513 114.368,-472.419"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="115.883,-469.264 105.356,-468.068 112.84,-475.568 115.883,-469.264"/>
</g>
<!-- 7&#45;&gt;0 -->
<g id="edge2" class="edge"><title>7&#45;&gt;0</title>
<path fill="none" stroke="grey" stroke-width="2" d="M70,-503.697C70,-495.983 70,-486.712 70,-478.112"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="73.5001,-478.104 70,-468.104 66.5001,-478.104 73.5001,-478.104"/>
</g>
<!-- 8 -->
<g id="node9" class="node"><title>8</title>
<path fill="none" stroke="#56d89a" stroke-width="2" d="M266,-180C266,-180 128,-180 128,-180 122,-180 116,-174 116,-168 116,-168 116,-156 116,-156 116,-150 122,-144 128,-144 128,-144 266,-144 266,-144 272,-144 278,-150 278,-156 278,-156 278,-168 278,-168 278,-174 272,-180 266,-180"/>
<text text-anchor="middle" x="197" y="-159.5" font-family="sans" font-size="10.00">de_compose_phenotype_data</text>
</g>
<!-- 12 -->
<g id="node13" class="node"><title>12</title>
<path fill="none" stroke="#59d856" stroke-width="2" d="M304,-108C304,-108 250,-108 250,-108 244,-108 238,-102 238,-96 238,-96 238,-84 238,-84 238,-78 244,-72 250,-72 250,-72 304,-72 304,-72 310,-72 316,-78 316,-84 316,-84 316,-96 316,-96 316,-102 310,-108 304,-108"/>
<text text-anchor="middle" x="277" y="-87.5" font-family="sans" font-size="10.00">de_ballgown</text>
</g>
<!-- 8&#45;&gt;12 -->
<g id="edge19" class="edge"><title>8&#45;&gt;12</title>
<path fill="none" stroke="grey" stroke-width="2" d="M216.775,-143.697C226.754,-134.965 239.011,-124.24 249.857,-114.75"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="252.231,-117.323 257.452,-108.104 247.622,-112.055 252.231,-117.323"/>
</g>
<!-- 9 -->
<g id="node10" class="node"><title>9</title>
<path fill="none" stroke="#56d8b9" stroke-width="2" d="M292,-36C292,-36 262,-36 262,-36 256,-36 250,-30 250,-24 250,-24 250,-12 250,-12 250,-6 256,-0 262,-0 262,-0 292,-0 292,-0 298,-0 304,-6 304,-12 304,-12 304,-24 304,-24 304,-30 298,-36 292,-36"/>
<text text-anchor="middle" x="277" y="-15.5" font-family="sans" font-size="10.00">all</text>
</g>
<!-- 10 -->
<g id="node11" class="node"><title>10</title>
<path fill="none" stroke="#56d8d8" stroke-width="2" d="M282.5,-468C282.5,-468 151.5,-468 151.5,-468 145.5,-468 139.5,-462 139.5,-456 139.5,-456 139.5,-444 139.5,-444 139.5,-438 145.5,-432 151.5,-432 151.5,-432 282.5,-432 282.5,-432 288.5,-432 294.5,-438 294.5,-444 294.5,-444 294.5,-456 294.5,-456 294.5,-462 288.5,-468 282.5,-468"/>
<text text-anchor="middle" x="217" y="-447.5" font-family="sans" font-size="10.00">raw_make_links_pe_sample</text>
</g>
<!-- 10&#45;&gt;1 -->
<g id="edge5" class="edge"><title>10&#45;&gt;1</title>
<path fill="none" stroke="grey" stroke-width="2" d="M232.82,-431.697C240.57,-423.22 250.039,-412.864 258.524,-403.583"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="261.197,-405.846 265.362,-396.104 256.031,-401.123 261.197,-405.846"/>
</g>
<!-- 11&#45;&gt;12 -->
<g id="edge18" class="edge"><title>11&#45;&gt;12</title>
<path fill="none" stroke="grey" stroke-width="2" d="M337.978,-143.697C327.874,-134.965 315.464,-124.24 304.482,-114.75"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="306.647,-111.995 296.792,-108.104 302.07,-117.291 306.647,-111.995"/>
</g>
<!-- 12&#45;&gt;9 -->
<g id="edge14" class="edge"><title>12&#45;&gt;9</title>
<path fill="none" stroke="grey" stroke-width="2" d="M277,-71.6966C277,-63.9827 277,-54.7125 277,-46.1124"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="280.5,-46.1043 277,-36.1043 273.5,-46.1044 280.5,-46.1043"/>
</g>
</g>
</svg>