.gitlab-ci.yml

test:
    image: $CI_REGISTRY_IMAGE:latest  #rocker/tidyverse
    stage: test
    tags: 
        - envinf2
    variables:
        R_LIBS_USER: "$CI_PROJECT_DIR/ci/lib/"
        RETICULATE_MINICONDA_PATH: "/root/.local/share/r-miniconda/"
        RETICULATE_PYTHON_ENV: "/root/.local/share/r-miniconda/envs/r-reticulate/"
        CHECK_DIR: "$CI_PROJECT_DIR/ci/logs/"
        BUILD_LOGS_DIR: "$CI_PROJECT_DIR/ci/logs/$CI_PROJECT_NAME.Rcheck"

    script:
        - if [ ! -d "$R_LIBS_USER" ]; then mkdir -p "$R_LIBS_USER"; fi
        - if [ ! -d "$BUILD_LOGS_DIR" ]; then mkdir -p "$BUILD_LOGS_DIR"; fi
        - R -e 'withr::with_libpaths(new = Sys.getenv("R_LIBS_USER"), {devtools::install_deps(dependencies = T);install.packages("plyr")})'
        - R -e '.libPaths(new = Sys.getenv("R_LIBS_USER"))'
        - R CMD build . --no-build-vignettes --no-manual
        - R CMD check $(ls -1t *.tar.gz | head -n 1) -o $CHECK_DIR --no-build-vignettes --no-manual
    cache:
        key: $CI_COMMIT_REF_SLUG
        untracked: true
        paths:
            - $R_LIBS_USER
    artifacts:
        paths:
            - $BUILD_LOGS_DIR
        when: "always"
    rules:
        - if: '$CI_PIPELINE_SOURCE == "merge_request_event" || $CI_PIPELINE_SOURCE == "web"'
        - if: '$CI_COMMIT_BRANCH == "master"'