Error in tmp[1, 2] : incorrect number of dimensions plot_resid Treemix

[KatherinOtalora]

Hello everyone

I have a problem, I am running the following line:

plot_resid("/Users/treemix-1.13/Specie.0", pop_order="/Users/treemix-1.13/specie.list.pop.1.txt").

My specie.list.pop.1.txt has 16 names of the populations, when I run it I get the graph of the residuals but only with the first 6 and then I get this error:

Error in tmp[1, 2] : incorrect number of dimensions In addition: Warning message:
In xy.coords(x, y, xlabel, ylabel, log) : NAs introduced by coercion.

What should I do? should I put the dimensions? Should I add dim_index=16 to my script? Or what is the parameter that I must modify?

Thank you in advance for your help

[NZY1314]

Hi KatherinOtalora,

I met the same error as you. Have you ever resolved it?

Best wishes,

Zhengyang Niu

[KatherinOtalora]

Hello

Yes, I was able to solve it, I leave you the link to my repository, there you will find everything related to Treemix (section 27).

https://github.com/KatherinOtalora/Paper_2023_SNPs_Plilfordi/tree/main

Greetings,