meta.yaml

{% set name = "metadecoder" %}
{% set version = "1.1.1rc5" %}

package:
  name: {{ name|lower }}
  version: {{ version }}

source:
  url: https://github.com/jolespin/metadecoder-nal/releases/download/{{ version }}/metadecoder-{{ version }}.tar.gz

build:
  noarch: python
  number: 0
  script: "{{ PYTHON }} -m pip install . --no-deps -vv"
  entry_points:
    - metadecoder = metadecoder.cli:main  # Add this if you have a command-line interface

requirements:
  host:
    - python >=3.8,<3.12
    - pip
    - setuptools
    - wheel
  
  run:
    - python >=3.8,<3.12
    - numpy >=1.20
    - scipy >=1.7
    - scikit-learn >=0.24
    - threadpoolctl >=3.0
    - pyrodigal
    - pyhmmsearch
    # Optional GPU support
    # - cupy-cuda11x  # Uncomment and adjust CUDA version as needed

test:
  imports:
    - metadecoder
  # Add any specific test commands if applicable
  # commands:
  #   - metadecoder --help

about:
  home: https://github.com/new-atlantis-labs/metadecoder-nal
  license: MIT
  license_family: MIT
  license_file: LICENSE
  summary: "MetaDecoder: An algorithm for clustering metagenomic sequences"
  description: |
    MetaDecoder is a novel method for clustering metagenomic contigs, 
    integrated with Pyrodigal and PyHMMSearch for enhanced functionality. 
    Supports GPU acceleration with CuPy.
  dev_url: https://github.com/jolespin/metadecoder-nal

extra:
  recipe-maintainers:
    - jolespin