setup.py

from Cython.Distutils import build_ext
from distutils.core import setup, Extension
import numpy
from Cython.Build import cythonize

cythonize("ana_cont/pade.pyx")
setup(name='ana_cont',
      version='1.1.2',
      description='Analytic continuation package',
      author='Josef Kaufmann',
      author_email='josefkaufma@gmail.com',
      url='https://github.com/josefkaufmann/ana_cont',
      packages=['ana_cont', 'gui'],
      package_dir={'ana_cont': 'ana_cont/', 'gui': 'gui/'},
      cmdclass={'build_ext': build_ext},
      ext_modules=[Extension('ana_cont.pade',
                             sources=['ana_cont/pade.c'],
                             libraries=['m'],
                             include_dirs=[numpy.get_include()])],
      include_package_data=True,
      zip_safe=False,
      setup_requires=['Cython'],
      install_requires=['numpy', 'scipy', 'Cython', 'h5py', 'matplotlib', 'PyQt5'],
      scripts=['scripts/maxent.py', 'scripts/pade.py', 'scripts/maxent_bosonic.py']
      )