diff --git a/CHANGES b/CHANGES index 01d66a2..57eab59 100644 --- a/CHANGES +++ b/CHANGES @@ -1,4 +1,8 @@ -0.2.3 - 2016-01--17 +0.2.4 - 2016-05-30 +================== +* BUG: Update author’s contact details + +0.2.3 - 2016-01-17 ================== * BUG: Fix error in ``wellington_bootstrap.py`` which caused no output to be written to disk (thanks to Duy Pham for reporting) diff --git a/README.rst b/README.rst index a7b7640..5c075eb 100644 --- a/README.rst +++ b/README.rst @@ -42,7 +42,7 @@ for full documentation go to: http://pythonhosted.org/pyDNase/ Support ------- -If you're having any troubles, please send an email to `j.piper@warwick.ac.uk` and I'll do my best to help you out. If you notice any bugs, then please raise an issue over at the github repo. If you require more formal training on the analysis of DNase-seq or ATAC-seq data, I am available for consultancy. Likewise, if you are a commercial entity looking for a support contract, please get in touch. +If you're having any troubles, please send an email to `j.piper@me.com` and I'll do my best to help you out. If you notice any bugs, then please raise an issue over at the github repo. If you require more formal training on the analysis of DNase-seq or ATAC-seq data, I am available for consultancy. Likewise, if you are a commercial entity looking for a support contract, please get in touch. Contributions ------------- @@ -61,4 +61,4 @@ Reference License ------- -Copyright (C) 2015 Jason Piper. This work is licensed under the GNU GPLv3 license, see ``LICENCE.TXT`` for details. If you require the use of this software under a difference license (e.g. for commercial purposes), please email me at `j.piper@warwick.ac.uk`. +Copyright (C) 2015 Jason Piper. This work is licensed under the GNU GPLv3 license, see ``LICENCE.TXT`` for details. If you require the use of this software under a difference license (e.g. for commercial purposes), please email me at `j.piper@me.com`. diff --git a/examples/footprinttest.py b/examples/footprinttest.py index 5c2ccfe..7c573ae 100644 --- a/examples/footprinttest.py +++ b/examples/footprinttest.py @@ -1,4 +1,4 @@ -# Copyright (C) 2013 Jason Piper - j.piper@warwick.ac.uk +# Copyright (C) 2016 Jason Piper - j.piper@me.com # # This program is free software: you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by diff --git a/pyDNase/__init__.py b/pyDNase/__init__.py index 847aa9f..ebb7f12 100644 --- a/pyDNase/__init__.py +++ b/pyDNase/__init__.py @@ -1,4 +1,4 @@ -# Copyright (C) 2013 Jason Piper - j.piper@warwick.ac.uk +# Copyright (C) 2016 Jason Piper - j.piper@me.com # # This program is free software: you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by diff --git a/pyDNase/_version.py b/pyDNase/_version.py index 4f7052b..7a17bdd 100644 --- a/pyDNase/_version.py +++ b/pyDNase/_version.py @@ -1 +1 @@ -__version__ = "0.2.3" \ No newline at end of file +__version__ = "0.2.4" \ No newline at end of file diff --git a/pyDNase/footprinting/__init__.py b/pyDNase/footprinting/__init__.py index 606f26f..97af6ed 100644 --- a/pyDNase/footprinting/__init__.py +++ b/pyDNase/footprinting/__init__.py @@ -1,4 +1,4 @@ -# Copyright (C) 2013 Jason Piper - j.piper@warwick.ac.uk +# Copyright (C) 2016 Jason Piper - j.piper@me.com # # This program is free software: you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by diff --git a/pyDNase/scripts/dnase_average_profile.py b/pyDNase/scripts/dnase_average_profile.py index 2b06f4f..2cf71a3 100755 --- a/pyDNase/scripts/dnase_average_profile.py +++ b/pyDNase/scripts/dnase_average_profile.py @@ -1,6 +1,6 @@ #!/usr/bin/env python -# Copyright (C) 2013 Jason Piper - j.piper@warwick.ac.uk +# Copyright (C) 2016 Jason Piper - j.piper@me.com # # This program is free software: you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by diff --git a/pyDNase/scripts/dnase_bias_estimator.py b/pyDNase/scripts/dnase_bias_estimator.py index a939f1b..f87ccd4 100755 --- a/pyDNase/scripts/dnase_bias_estimator.py +++ b/pyDNase/scripts/dnase_bias_estimator.py @@ -1,6 +1,6 @@ #!/usr/bin/env python -# Copyright (C) 2015 Jason Piper - j.piper@warwick.ac.uk +# Copyright (C) 2016 Jason Piper - j.piper@me.com # # This program is free software: you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by diff --git a/pyDNase/scripts/dnase_cut_counter.py b/pyDNase/scripts/dnase_cut_counter.py index 8401c37..d14ddb1 100755 --- a/pyDNase/scripts/dnase_cut_counter.py +++ b/pyDNase/scripts/dnase_cut_counter.py @@ -1,6 +1,6 @@ #!/usr/bin/env python -# Copyright (C) 2015 Jason Piper - j.piper@warwick.ac.uk +# Copyright (C) 2016 Jason Piper - j.piper@me.com # # This program is free software: you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by diff --git a/pyDNase/scripts/dnase_ddhs_scorer.py b/pyDNase/scripts/dnase_ddhs_scorer.py index f703e35..3c2bf27 100755 --- a/pyDNase/scripts/dnase_ddhs_scorer.py +++ b/pyDNase/scripts/dnase_ddhs_scorer.py @@ -1,6 +1,6 @@ #!/usr/bin/env python -# Copyright (C) 2015 Jason Piper - j.piper@warwick.ac.uk +# Copyright (C) 2016 Jason Piper - j.piper@me.com # # This program is free software: you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by diff --git a/pyDNase/scripts/dnase_fos_scorer.py b/pyDNase/scripts/dnase_fos_scorer.py index 3c986c6..383d46d 100755 --- a/pyDNase/scripts/dnase_fos_scorer.py +++ b/pyDNase/scripts/dnase_fos_scorer.py @@ -1,6 +1,6 @@ #!/usr/bin/env python -# Copyright (C) 2015 Jason Piper - j.piper@warwick.ac.uk +# Copyright (C) 2016 Jason Piper - j.piper@me.com # # This program is free software: you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by diff --git a/pyDNase/scripts/dnase_to_JSON.py b/pyDNase/scripts/dnase_to_JSON.py index ffc9d5c..aec94d1 100755 --- a/pyDNase/scripts/dnase_to_JSON.py +++ b/pyDNase/scripts/dnase_to_JSON.py @@ -1,6 +1,6 @@ #!/usr/bin/env python -# Copyright (C) 2013 Jason Piper - j.piper@warwick.ac.uk +# Copyright (C) 2016 Jason Piper - j.piper@me.com # # This program is free software: you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by diff --git a/pyDNase/scripts/dnase_to_javatreeview.py b/pyDNase/scripts/dnase_to_javatreeview.py index c5d9dd0..49bf230 100755 --- a/pyDNase/scripts/dnase_to_javatreeview.py +++ b/pyDNase/scripts/dnase_to_javatreeview.py @@ -1,6 +1,6 @@ #!/usr/bin/env python -# Copyright (C) 2013 Jason Piper - j.piper@warwick.ac.uk +# Copyright (C) 2016 Jason Piper - j.piper@me.com # # This program is free software: you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by diff --git a/pyDNase/scripts/dnase_wig_tracks.py b/pyDNase/scripts/dnase_wig_tracks.py index 2e4bf21..f722395 100755 --- a/pyDNase/scripts/dnase_wig_tracks.py +++ b/pyDNase/scripts/dnase_wig_tracks.py @@ -1,6 +1,6 @@ #!/usr/bin/env python -# Copyright (C) 2013 Jason Piper - j.piper@warwick.ac.uk +# Copyright (C) 2016 Jason Piper - j.piper@me.com # # This program is free software: you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by diff --git a/pyDNase/scripts/examples/example_footprint_scores.py b/pyDNase/scripts/examples/example_footprint_scores.py index 034a384..c756bbc 100644 --- a/pyDNase/scripts/examples/example_footprint_scores.py +++ b/pyDNase/scripts/examples/example_footprint_scores.py @@ -1,6 +1,6 @@ #!/usr/bin/env python -# Copyright (C) 2013 Jason Piper - j.piper@warwick.ac.uk +# Copyright (C) 2016 Jason Piper - j.piper@me.com # # This program is free software: you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by diff --git a/pyDNase/scripts/wellington_bootstrap.py b/pyDNase/scripts/wellington_bootstrap.py index 7424db6..3ecb1aa 100755 --- a/pyDNase/scripts/wellington_bootstrap.py +++ b/pyDNase/scripts/wellington_bootstrap.py @@ -1,6 +1,6 @@ #!/usr/bin/env python -# Copyright (C) 2015 Jason Piper - j.piper@warwick.ac.uk +# Copyright (C) 2016 Jason Piper - j.piper@me.com # # This program is free software: you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by diff --git a/pyDNase/scripts/wellington_footprints.py b/pyDNase/scripts/wellington_footprints.py index 06185d7..266df3e 100755 --- a/pyDNase/scripts/wellington_footprints.py +++ b/pyDNase/scripts/wellington_footprints.py @@ -1,6 +1,6 @@ #!/usr/bin/env python -# Copyright (C) 2013 Jason Piper - j.piper@warwick.ac.uk +# Copyright (C) 2016 Jason Piper - j.piper@me.com # # This program is free software: you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by diff --git a/setup.py b/setup.py index 613123b..70b8b57 100644 --- a/setup.py +++ b/setup.py @@ -15,7 +15,7 @@ description='DNase-seq analysis library', long_description=open('README.rst',"rt").read(), author='Jason Piper', - author_email='j.piper@warwick.ac.uk', + author_email='j.piper@me.com', url='http://jpiper.github.io/pyDNase', license='GPLv3', ext_modules = [Extension("pyDNase.footprinting.WellingtonC", sources = ["pyDNase/footprinting/WellingtonC.c"], extra_compile_args=['-std=c99'])],