build-and-deploy.yaml

name: biocbook

on:
  push:
    branches:
      - devel
      - RELEASE_**

jobs:
  build-push:
    runs-on: ubuntu-latest
    name: Build and push Docker [${{ github.ref_name }}]
    permissions:
      contents: write
      packages: write

    steps:
      
      - name: 🧾 Checkout repository
        uses: actions/checkout@v3
        with:
          persist-credentials: false

      - name: 📝 Get book info
        id: info
        run: |
          echo pkgversion=$(grep -m1 -E '^Version: +' DESCRIPTION | sed -E 's/.*: +//') >> "${GITHUB_ENV}"

      - name: 🔐 Log in to the Container registry
        uses: docker/login-action@v2
        with:
          registry: ghcr.io
          username: ${{ github.repository_owner }}
          password: ${{ secrets.GITHUB_TOKEN }}

      - name: 🏷 Get metadata for Docker
        id: meta
        uses: docker/metadata-action@v4
        with:
          images: ghcr.io/${{ github.repository_owner }}/${{ github.workflow }}
          tags: |
            type=raw,value=${{ env.pkgversion}},enable=true
            type=raw,value=${{ github.ref_name }},enable=true

      - name: 👷 Build and push multi-arch Docker image
        uses: docker/build-push-action@v4
        with:
          context: .
          platforms: linux/amd64
          file: Dockerfile
          push: true
          tags: ${{ steps.meta.outputs.tags }}
          outputs: type=image,annotation-index.org.opencontainers.image.description=${{ github.workflow }}
          build-args: |
            BIOC_VERSION=${{ github.ref_name }}
    
  render-deploy:
    needs: build-push
    runs-on: ubuntu-latest
    name: Render and publish book [${{ github.ref_name }}]
    container: ghcr.io/${{ github.repository_owner }}/${{ github.workflow }}:${{ github.ref_name }}
    permissions:
      contents: write
      packages: read

    steps:

      - name: 🧾 Checkout repository
        uses: actions/checkout@v3
        with:
          persist-credentials: false

      - name: 📦 List installed packages
        run: |
          pkgs <- installed.packages()[,"Package"]
          sessioninfo::session_info(pkgs, include_base = TRUE)
        shell: Rscript {0}

      - name: 📚 Install rsync
        run: |
          apt-get update && apt-get install -y rsync

      - name: 🔧 Install quarto dependencies    
        run: |
          quarto install tinytex
          quarto check
          
      # - name: 🔧 Install python dependencies    
      #   uses: py-actions/py-dependency-install@v4
      #   with:
      #     path: "inst/assets/requirements.txt"
  
      - name: 🖌 Render book from versioned container    
        run: |
          quarto render

      - name: 🏷 Get gh-branch directory to deploy to
        run: |
          echo folder=$(echo ${{ github.ref_name }} | sed 's,RELEASE_,,' | tr '_' '.') >> "${GITHUB_ENV}"

      - name: 🚀 Deploy book to Github Pages on versioned branch
        uses: JamesIves/github-pages-deploy-action@v4.4.3
        with:
          folder: docs/ 
          target-folder: docs/${{ env.folder }}/ 
          branch: gh-pages
          clean: false