Fix Docker cleanup issues and bump version to 2.8.0.0

- Fixed cleanup paths in data-cleaner: changed from /data/qdrant/* to /qdrant/storage/*
- Made data-cleaner mount consistent with qdrant service mount path
- Enhanced uninstall now properly removes root-owned files in Docker
- Updated test expectations to match corrected mount paths
- All CI tests passing

🤖 Generated with [Claude Code](https://claude.ai/code)

Co-Authored-By: Claude <noreply@anthropic.com>

Author: jsbattig

src/code_indexer/__init__.py

@@ -5,5 +5,5 @@
 to provide code search capabilities.
 """
 
-__version__ = "2.7.0.0"
+__version__ = "2.8.0.0"
 __author__ = "Code Indexer Team"

src/code_indexer/cli.py

@@ -3523,17 +3523,17 @@ def _perform_complete_system_wipe(force_docker: bool, console: Console):
         style="yellow",
     )
 
-    # Step 1: Standard cleanup first
-    console.print("\n🔧 [bold]Step 1: Standard container cleanup[/bold]")
+    # Step 1: Enhanced cleanup first
+    console.print("\n🔧 [bold]Step 1: Enhanced container cleanup[/bold]")
     try:
         docker_manager = DockerManager(force_docker=force_docker)
-        if not docker_manager.remove_containers(remove_volumes=True):
+        if not docker_manager.cleanup(remove_data=True, verbose=True):
             console.print(
-                "⚠️  Standard cleanup had issues, continuing with wipe...",
+                "⚠️  Enhanced cleanup had issues, continuing with wipe...",
                 style="yellow",
             )
         docker_manager.clean_data_only(all_projects=True)
-        console.print("✅ Standard cleanup completed")
+        console.print("✅ Enhanced cleanup completed")
     except Exception as e:
         console.print(
             f"⚠️  Standard cleanup failed: {e}, continuing with wipe...", style="yellow"
@@ -3846,14 +3846,14 @@ def uninstall(ctx, force_docker: bool, wipe_all: bool):
         if wipe_all:
             _perform_complete_system_wipe(force_docker, console)
         else:
-            # Standard uninstall
+            # Standard uninstall with orchestrated cleanup
             docker_manager = DockerManager(force_docker=force_docker)
 
-            # Remove containers and volumes completely
-            if not docker_manager.remove_containers(remove_volumes=True):
+            # Use enhanced cleanup to remove root-owned files before stopping containers
+            if not docker_manager.cleanup(remove_data=True, verbose=True):
                 sys.exit(1)
 
-            # Also clean data
+            # Also clean collections data
             docker_manager.clean_data_only(all_projects=True)
 
             console.print("✅ Complete uninstallation finished", style="green")

src/code_indexer/services/docker_manager.py

@@ -2868,7 +2868,7 @@ def cleanup(
                 # Use data cleaner to clean named volume contents
                 if verbose:
                     self.console.print("🧹 Using data cleaner for root-owned files...")
-                cleanup_paths = ["/data/ollama/*", "/data/qdrant/*"]
+                cleanup_paths = ["/data/ollama/*", "/qdrant/storage/*"]
                 self.clean_with_data_cleaner(cleanup_paths)
 
                 # Now stop the data cleaner too
@@ -3671,7 +3671,7 @@ def _build_cleaner_service(
             qdrant_volume_path = str(project_qdrant_dir.absolute())
 
         volumes = [
-            f"{qdrant_volume_path}:/data/qdrant",  # Relative path for CoW clone support
+            f"{qdrant_volume_path}:/qdrant/storage",  # Match qdrant service mount path
         ]
 
         if include_ollama_volumes:

tests/test_per_project_containers.py

@@ -401,7 +401,7 @@ def test_data_cleaner_service_uses_project_local_storage(self):
         # Find the qdrant data volume mount
         qdrant_mount = None
         for volume in cleaner_service["volumes"]:
-            if "/data/qdrant" in volume:
+            if "/qdrant/storage" in volume:
                 qdrant_mount = volume
                 break