diff --git a/src/napari_sam_labeling_tools/_sam_prompt_segmentation_widget.py b/src/napari_sam_labeling_tools/_sam_prompt_segmentation_widget.py index 9403b9b..6c2e579 100644 --- a/src/napari_sam_labeling_tools/_sam_prompt_segmentation_widget.py +++ b/src/napari_sam_labeling_tools/_sam_prompt_segmentation_widget.py @@ -642,5 +642,5 @@ def export_segmentation(self, out_format="nrrd"): self, "Jug Lab", ".", "Segmentation(*.nrrd)" ) if selected_file is not None and len(selected_file) > 0: - nrrd.write(selected_file, self.segmentation_layer.data) - notif.show_info("Selected segmentation was saved successfully.") + nrrd.write(selected_file, np.transpose(self.segmentation_layer.data)) + notif.show_info("Selected segmentation was exported successfully.") diff --git a/src/napari_sam_labeling_tools/_sam_rf_segmentation_widget.py b/src/napari_sam_labeling_tools/_sam_rf_segmentation_widget.py index 03b3c5a..1d21827 100644 --- a/src/napari_sam_labeling_tools/_sam_rf_segmentation_widget.py +++ b/src/napari_sam_labeling_tools/_sam_rf_segmentation_widget.py @@ -659,5 +659,5 @@ def export_segmentation(self, out_format="nrrd"): if selected_file is not None and len(selected_file) > 0: if not selected_file.endswith(".nrrd"): selected_file += ".nrrd" - nrrd.write(selected_file, self.segmentation_layer.data) - notif.show_info("Selected segmentation was saved successfully.") + nrrd.write(selected_file, np.transpose(self.segmentation_layer.data)) + notif.show_info("Selected segmentation was exported successfully.")