You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
Describe the bug
After performing a slicing operation on an AnnData variable(single cell data, h5ad file read using Scanpy), the program crashed. Neither new variable can be detected, nor operations on existing variables can be recognized: the 'type-size-shape-content' of the displayed dataframe or int number do not change. However, if I view the contents of the dataframe using "View contents," I can see the changed data.
To Reproduce
Steps to reproduce the behavior:
import scanpy as sc
import pandas as pd
num = 6 # OK
df = pd.DataFrame({'A':[1,2,3], 'B':[4,5,6]}) # OK
adata = sc.datasets.blobs() # This is a small built-in dataset for reproduce. OK
adata1 = adata[0:10, ] # Crash happen, doesn't appear in variable inspector
num = 7 # doesn't change in 'type size shape content'
df = df['A'] # doesn't change in 'type size shape content', but change in 'view contents'
Screenshots
before crash:
after crash:
Your Environment(please complete the following information):
OS : linux
Browser : Edge
Version of this extension you are using :
jupyterlab 4.0.9
lckr_jupyterlab_variableinspector 3.1.0
Additional context
Looking forward to your reply. Thanks.
The text was updated successfully, but these errors were encountered:
Describe the bug
After performing a slicing operation on an AnnData variable(single cell data, h5ad file read using Scanpy), the program crashed. Neither new variable can be detected, nor operations on existing variables can be recognized: the 'type-size-shape-content' of the displayed dataframe or int number do not change. However, if I view the contents of the dataframe using "View contents," I can see the changed data.
To Reproduce
Steps to reproduce the behavior:
Screenshots
before crash:
after crash:
Your Environment(please complete the following information):
Additional context
Looking forward to your reply. Thanks.
The text was updated successfully, but these errors were encountered: