Tools for investigation of electrophysiology models for human atrial myocytes. Code develop during the Simula Summer School 2014.
Contributors Jonas van den Brink (j.v.brink@fys.uio.no)
Tools used gotran (https://bitbucket.org/johanhake/gotran) goss (https://bitbucket.org/johanhake/goss) FEniCS (http://fenicsproject.org/) beat-adjoint (https://bitbucket.org/johanhake/beatadjoint-delta-dg)
Table of contents 0D - scripts for pacing a 0D cell model using the gotran tool 1D - scripts of solving the cable equation to find CV 2D - scripts for solving the monodomain equation on a unit square and inducing spiral waves data - results and steady-cycle states fig - figures of results, etc movies - animations of 2D solutions over time ode - the gotran .ode files papers - relevant scientific papers plotscripts - scripts for plotting resulting data presentation - final presentation for the summer school ref - reference code, figures and data provided by advisors