From 174cfd9ca56695304750b8cd2e2381bcd8742974 Mon Sep 17 00:00:00 2001
From: jw2249a <github@jackryanwilliams.com>
Date: Mon, 13 May 2024 11:09:46 +0000
Subject: [PATCH] fixing dims error in gammakpar addition

---
 src/fastlink/fastlink.jl         | 3 +--
 src/gammas/gammaCKfuzzy.jl       | 1 -
 src/gammas/gammaKpar.jl          | 2 +-
 src/term_frequency_adjustment.jl | 5 -----
 4 files changed, 2 insertions(+), 9 deletions(-)

diff --git a/src/fastlink/fastlink.jl b/src/fastlink/fastlink.jl
index fbd8a8b..dc1824f 100755
--- a/src/fastlink/fastlink.jl
+++ b/src/fastlink/fastlink.jl
@@ -132,8 +132,7 @@ function fastLink(dfA::DataFrame, dfB::DataFrame, config::Dict{String,Any})
     end     
 
     results = process_comparisons(res, emlink_configuration, _dims, parameters, tf_tables)
-
-
+    
     if length(results)  == 3
         return Dict("ids" => indices_to_uids(dfA[!, config["idvar"][1]],dfB[!, config["idvar"][2]],results[1].indices),
                 "resultsEM" => results[2],
diff --git a/src/gammas/gammaCKfuzzy.jl b/src/gammas/gammaCKfuzzy.jl
index 54357d8..b5d562d 100644
--- a/src/gammas/gammaCKfuzzy.jl
+++ b/src/gammas/gammaCKfuzzy.jl
@@ -179,7 +179,6 @@ function gammaCKfuzzy!(vecA::PooledVector,vecB::PooledVector,results::DiBitMatri
     if @isdefined(_dims) == false
         _dims = (length(vecA), length(vecB))
     end
-
     # functions that update the results view
     if partial
         score_value! = score_value2
diff --git a/src/gammas/gammaKpar.jl b/src/gammas/gammaKpar.jl
index 78204d2..c1b1ffd 100755
--- a/src/gammas/gammaKpar.jl
+++ b/src/gammas/gammaKpar.jl
@@ -145,7 +145,7 @@ function gammaKpar!(vecA::Vector,vecB::Vector,results::DiBitMatrix)
     Threads.@threads for (ix, x) in collect(enumerate(vecA))
         indices_x = findall(vecA .=== x)
         if ismissing(x)
-            for iy in collect(1:dims[2])
+            for iy in collect(1:_dims[2])
                 results[ix,iy] = missingval
             end
         else
diff --git a/src/term_frequency_adjustment.jl b/src/term_frequency_adjustment.jl
index 43248c1..3fc3a65 100644
--- a/src/term_frequency_adjustment.jl
+++ b/src/term_frequency_adjustment.jl
@@ -99,9 +99,6 @@ function generate_tf_adjustment_dict(EMOutput::Dict{String,Any}, tfPatterns::Dic
 end
 
 
-
-
-
 function find_tf_pattern_vars(unique_pattern::Vector{UInt8}, tf_indices::Vector{Int64})::Vector{Int64}
     return intersect(tf_indices, findall(unique_pattern .== match1 .|| unique_pattern .== match2))
 end
@@ -159,8 +156,6 @@ function get_tf_weight(parameters::Dict, varname::String)::Float64
 end
 
 
-
-
 function update_tf_zetas_ismatch(final_bf::Vector{Float64},
                                  threshold_match::Float64)
     bf_len = length(final_bf)