Makefile

################################################################################
#
#   Makefile for RMG Py
#
################################################################################

.PHONY : all minimal main measure solver cantherm clean decython

all: main measure solver

minimal:
	python setup.py build_ext minimal --build-lib . --build-temp build --pyrex-c-in-temp

main:
	python setup.py build_ext main --build-lib . --build-temp build --pyrex-c-in-temp

measure:
	python setup.py build_ext measure --build-lib . --build-temp build --pyrex-c-in-temp

solver:
	python setup.py build_ext solver --build-lib . --build-temp build --pyrex-c-in-temp

cantherm:
	python setup.py build_ext cantherm --build-lib . --build-temp build --pyrex-c-in-temp

clean:
	python setup.py clean --build-temp build
	rm -rf build/
	find . -name '*.so' -exec rm -f '{}' \;
	find . -name '*.pyc' -exec rm -f '{}' \;

decython:
	# de-cythonize all but the 'minimal'. Helpful for debugging in "pure python" mode.
	find . -name *.so ! \( -name _statmech.so -o -name quantity.so -o -regex '.*rmgpy/measure/.*' -o -regex '.*rmgpy/solver/.*' \) -exec rm -f '{}' \;
	find . -name *.pyc -exec rm -f '{}' \;

test:
	nosetests --all-modules --verbose --with-coverage --cover-inclusive --cover-package=rmgpy --cover-erase --cover-html --cover-html-dir=testing/coverage rmgpy

eg1: all
	mkdir -p testing/minimal
	rm -rf testing/minimal/*
	cp examples/rmg/minimal/input.py testing/minimal/input.py
	coverage erase
	echo "Running with coverage tracking AND profiling"
	coverage run rmg.py -p testing/minimal/input.py
	coverage report
	coverage html
eg2: all
	mkdir -p testing/hexadiene
	rm -rf testing/hexadiene/*
	cp examples/rmg/1,3-hexadiene/input.py testing/hexadiene/input.py
	coverage erase
	echo "Running with coverage tracking AND profiling"
	coverage run rmg.py -p testing/hexadiene/input.py
	coverage report
	coverage html