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DESCRIPTION
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DESCRIPTION
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Package: turboGliph
Type: Package
Title: Find Specificity Groups with GLIPH and GLIPH2 Method
Version: 0.99.2
Authors@R:
c(person(given = "Jan-Patrick",
family = "Hetzel",
email = "jan-patrick.hetzel@stud.uni-due.de",
role = c("aut", "cre"),
comment = c(ORCID = "0000-0003-0175-6443")),
person(given = "Mohammadkarim",
family = "Saeedghalati",
role = "aut", "cre"),
person(given = "Farnoush",
family = "Farahpour",
role = "aut"),
person(given = "Daniel",
family = "Hoffmann",
role = "aut",
comment = c(ORCID = "0000-0003-2973-7869")))
Description: GLIPH is an algorithm to cluster TCRs that are predicted to bind the same MHC-restricted peptide antigen. With this package we provide a runtime efficient implementation of the GLIPH algorithm. The package is rounded off by the inclusion of the second version of GLIPH, GLIPH2, as well as the provision of an extensive customizable visualization function of the clustering result using visNetwork.
License: GPL-3
Encoding: UTF-8
LazyData: false
Imports: stringdist, dplyr, parallel, igraph, visNetwork, grr, viridis, plotfunctions, stringr, doParallel, foreach, grDevices
Suggests:
knitr, rmarkdown, prettydoc
VignetteBuilder: knitr
NeedsCompilation: no
Language: en-US
RoxygenNote: 7.2.3
biocViews: FunctionalPrediction, MotifDiscovery, GeneticVariability, FunctionalGenomics, ImmunoOncology, Clustering
BugReports: https://github.com/HetzDra/turboGliph/issues
Depends: R (>= 4.1.0)