Running block=TRUE crashes during permutations with "Error in .start_as_unnamed_integer(start)" #64
Description
I am consistently getting the following error while running permutations. It doesn't always happen on the same permutation.
Example output:
Beginning permutation 1
...Chromosome chr1: Smoothed (1.26 min). 38 CpG(s) excluded due to zero coverage. 72 regions scored (0.07 min).
...Chromosome chr2: Smoothed (1.87 min). 10 regions scored (0.04 min).
...Chromosome chr3: Smoothed (1.34 min). 6 regions scored (0.03 min).
...Chromosome chr4: Smoothed (0.68 min). 11 regions scored (0.04 min).
...Chromosome chr5: Smoothed (1.65 min). 2 CpG(s) excluded due to zero coverage. Error in .start_as_unnamed_integer(start) :
each range must have a start that is < 2^31 and > - 2^31
Calls: dmrseq ... .new_IRanges_from_start_end -> .start_as_unnamed_integer
In addition: Warning messages:
1: In FUN(X[[i]], ...) : no non-missing arguments to min; returning Inf
2: In FUN(X[[i]], ...) : no non-missing arguments to max; returning -Inf
Execution halted
I am using the latest version of all packages.