bibliography.bib

@article{caserta:etal:2012,
  author = {Caserta, E. and Haemig, H. A. H. and Manias, D. A. and Tomsic, J. and Grundy, F. J. and Henkin, T. M. and Dunny, G.M.},
  title = {\emph{In vivo} and \emph{in vitro} analyses of regulation of the pheromone-responsive \emph{prgQ} promoter by the PrgX pheromone receptor protein},
  journal = {Journal of Bacteriology},
  year = {2012},
  volume = {194},
  pages = {3386--3394},
}

@article{johnson:robinson:2016,
  author = {Johnson, J. and Robinson, V.R.},
  title = {Cleavage of JPS-1 in cells infected with human rhinovirus},
  journal = {mSystems},
  year = {2016},
  volume = {1},
  pages = {e00001-15},
}

@article{winnick:etal:2005,
  title={How do you improve compliance?},
  author={Winnick, Sheldon and Lucas, David O and Hartman, Adam L and Toll, David},
  journal={Pediatrics},
  volume={115},
  pages={e718--e724},
    year={2005},
}

@article{falagas:kasiakou:2006,
  author={Falagas, Matthew E and Kasiakou, Sofia K},
  year = {2006},
  title = {Use of international units when dosing colistin will help decrease confusion related to various formulations of the drug around the world},
  journal = {Antimicrobial Agents and Chemotherapy},
  volume={50},
  pages = {2274-2275},
  note = {(Letter) \emph{[``Letter'' or ``Letter to the editor'' is allowed but not required at the end of such an entry.]}}
}

@article{coxInPress,
    author = {Cox, C.S. and Brown, B.R. and Smith, J.C.},
    journal = {Journal of General Genetics},
    Tyear = {in press},
    note={\emph{[Article title is optional; journal title is mandatory]}}
}

@incollection{forman2003,
  title = {Specimen collection, transport, and processing: virology},
  author = {Forman, Michael S and Valsamakis, Alexandra},
  booktitle = {Manual of clinical microbiology},
  edition = {8th},
  editor = {Murray, P.R. and Baron, E.J. and Pfaller, M.A. and Jorgensen, J.H. and Yolken, R.H.},
  pages = {1227--1241},
  year = {2003},
  publisher = {ASM Press},
  address = {Washington, DC},
}

@incollection{dnf01,
  author = {da Costa, M. S. and Nobre, M. F. and Rainey, F.A.},
  year = {2001},
  title = {Genus I. Thermus Brock and Freeze 1969, 295,$^{\text{AL}}$ emend. Nobre, Trüper and da Costa 1996b, 605},
  booktitle = {Bergey's manual of systematic bacteriology},
  edition={2nd},
  volume= {1},
  publisher = {Springer},
  address = {New York, NY},
  editor = {Boone, D.R. and Castenholz, R.W. and Garrity, G.M.},
  pages = {404--414},
}

@incollection{fitzgerald:shaw,
  author = {Fitzgerald, G. and Shaw, D.},
  booktitle = {Clinical microbiology},
  editor={Waters, A. E.},
  publisher = {EFH Publishing Co},
  address={Boston, MA},
  Tyear = {in press},
  note = {\emph{[Chapter title is optional]}},
}

@incollection{green:etal:1984,
  author = {Green, P. N. and Hood, D. and Dow, C.S.},
  title = {Taxonomic status of some methylotrophic bacteria},
  pages= {251--254},
  editor = {Crawford, R.L. and Hanson, R. S.},
  year = {1984},
  publisher = {American Society for Microbiology},
  booktitle={Microbial growth on \ch{C1} compounds. Proceedings of the 4th International Symposium},
  address = {Washington, DC},
}

@confabstract{rotimi:etal:2005,
  author = {Rotimi, V. O. and Salako, N. O. and Mohaddas, E. M. and Philip, L.P.},
  number = {D-1658},
  booktitle = {45th Interscience Conference of Antimicrobial Agents and Chemotherapy},
  year = {2005},
  note = {\emph{[Abstract title is optional]}},
}

@confabstract{sjmj05,
  author = {Smith, D. and Johnson, C. and Maier, M. and Maurer, J.J.},
  title = {Distribution of fimbrial, phage and plasmid associated virulence genes among poultry \emph{Salmonella enterica} serovars},
  number={P-038},
  pages= {445},
  booktitle = {105th General Meeting of the American Society for Microbiology},
  organization = {American Society for Microbiology},
  year = {2005},
  address = {Washington, DC},
  note={\emph{[Abstract title is optional]}},
}

@article{gpbmmc96,
  author = {Garcia, C. O. and Paira, P. and Burgos, R. and Molina, J. and Molina, J. F. and Calvo, C.},
  title = {Detection of salmonella {DNA} in synovial membrane and synovial fluid from {L}atin {A}merican patients},
  journal = {Arthritis and Rheumatism},
  year = {1996},
  volume = {39},
  number = {Suppl},
  pages = {S185},
  note = {\emph{[Meeting abstract published in journal supplement]}},
}

@phdthesis{d98,
  author = {O'Malley, D.R.},
  year = {1998},
  address = {Los Angeles, CA},
  school = {University of California},
  note = {\emph{[Title is optional]}}
}

@book{Stratagene06,
  author = {{Stratagene}},
  title = {Yeast DNA isolation system: instruction manual},
  year = {2006},
  address = {La Jolla, CA},
  publisher = {Stratagene},
  note = {\emph{[Use the company name as the author if none is provided for a company publication]}}
}

@patent{odell:1970,
  author = {Odell, J.C.},
  title = {Process for batch culturing},
  location = {US},
  number = {484,363,770},
  year = {April 1970},
  note = {\emph{[Include the name of the patented item/process if possible; the patent number is mandatory]}}
}

@article{harrison:etal:2015,
  author = {Harrison, F. and Roberts, A. E. L. and Gabrilska, R. and Rumbaugh, K. P. and Lee, C. and Diggle, S.P.},
  title = {A 1000-year-old antimicrobial remedy with antistaphylococcal activity},
  year = {2015},
  journal = {mBio},
  volume = {6},
  pages = {e01129-15},
  note = {\emph{[Original article that describes how data submitted to a database were generated]}}
}

@misc{harrison:data,
  author = {Harrison, F. and Roberts, A.E.L. and Gabrilska, R. and Rumbaugh, K. P. and Lee, C. and Diggle, S.P.},
  title = {Data from ``A 1000-year-old antimicrobial remedy with antistaphylococcal activity''},
  year = {2015},
  publisher ={Dryad Digital Repository},
  url = {https://doi.org/10.5061/dryad.mn17p},
  note = {\emph{[Citation for the database where the data in the previous reference were deposited; the URL is necessary]}}
}

@article{wr16,
  author = {Wang, Y. and Rozen, D.},
  title = {Colonization and transmission of the gut microbiota of the burying beetle, \emph{Nicrophorus vespilloides}, through development},
  year = {2016},
  journal = {bioRxiv},
  url = {https://doi.org/10.1101/091702}
}

@article{mj15,
  author = {Magalon, A. and Mendel, R.R},
  title = {Biosynthesis and insertion of the molybdenum cofactor},
  journal = {EcoSal Plus 2015},
  month={15 June},
  year = {2015, posting date},
  doi = {10.1128/ecosalplus.ESP-0006-2013},
  note = {\emph{[In some online journal articles, posting or revision dates may serve as the year of publication; a DOI (preferred) or URL is required for articles with nontraditional page numbers or electronic article identifiers. A posting or accession date is required for any online reference that is periodically updated or changed.]}}
}

@article{wpm06,
  author = {Wang, G. G. and Pasillas, M. P. and Kamps, M.P.},
  title = {Persistent transactivation by Meis1 replaces Hox function in myeloid leukemogenesis models: evidence for cooccupancy of Meis1-Pbx and Hox-Pbx complexes on promoters of leukemia-associated genes},
  month = {15 May},
  year = {2006},
  journal = {Molecular and Cellular Biology},
  doi = {10.1128/MCB.00586-06},
  note = {\emph{[Citations of accepted ASM manuscripts (articles from other, issue-based ASM journals that are published ahead of the issue).]}},
}

@article{zmbf01,
  author = {Zhou, F. X. and Merianos, H. J. and Brunger, A. T. and Engelman, D.M.},
  title = {Polar residues drive association of polyleucine transmembrane helices},
  month = {13 February},
  year = {2001, posting date},
  journal = {Proceedings of the National Academy of Sciences of the {United States of America}},
  doi = {10.1073/pnas.041593698},
  note = {\emph{[Journals not published by ASM may use various styles for their publish-ahead-of-print manuscripts, but citation entries must include the following information: author name(s), posting date, title, journal title, and volume and page numbers and/or DOI.]}}
}

@dataset{cmcsvbce02,
  author = {Christian, Susan L. and McDonough, Jennifer and Liu, Chun {\relax-Y}u and Shaikh, Sanober and Vlamakis, Vivian and Badner, Judith A. and Chakravarti, Aravinda and Gershon, Elliont S},
  title = {Data from ``An evaluation of the assembly of an approximately 15-Mb region on human chromosome 13q32-q33 linked to bipolar disorder and schizophrenia''},
  publisher = {GenBank},
  year = {2002},
  url = {https://www.ncbi.nlm.nih.gov/nuccore/AF339794},
  number = {AF339794},
  note = {\emph{[Accession number]}}
}

@dataset{s13,
  author = {Sun, Z.},
  title = {Reprocessed: in-depth membrane proteomic study of breast cancer tissues},
  year = {2013},
  publisher = {ProteomeXchange},
  url = {http://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=RPXD000665},
  note = {\emph{[Unassigned accession number]}}
}

@misc{h15,
  author = {Hogle, S.},
  title = {Supplemental material for Hogle et al. 2015 mBio},
  year = {2015},
  url = {https://doi.org/10.6084/m9.figshare.1533034.v1},
  publisher = {figshare},
  urldate = {16 March 2017},
  note = {\emph{[Code and/or software.]}}
}

@misc{nj16,
  author = {Nesbitt, H. K. and Moore, J.W.},
  title = {Data from ``Species and population diversity in Pacific salmon fisheries underpin indigenous food security''},
  year = {2016},
  publisher = {Dryad Digital Repository},
  url = {https://doi.org/10.5061/dryad.ng8pf},
  note = {\emph{[Data set in repository]}},
}