[Release Prep] v0.1.3

kevin931 · kevin931 · commit dc87e6f774d9 · 2024-12-28T15:14:56.000-06:00
diff --git a/.readthedocs.yaml b/.readthedocs.yaml
@@ -3,7 +3,7 @@ version: 2
 build:
   os: ubuntu-20.04
   tools:
-    python: "3.9"
+    python: "3.12"
 
 sphinx:
    configuration: docs/source/conf.py
diff --git a/PyCytoData/__init__.py b/PyCytoData/__init__.py
@@ -1,4 +1,4 @@
 from PyCytoData.data import DataLoader, PyCytoData, FileIO
 from PyCytoData import exceptions, preprocess
 
-__VERSION__ = "0.1.2"
+__VERSION__ = "0.1.3"
diff --git a/README.md b/README.md
@@ -161,22 +161,22 @@ For detailed documentation along with tutorials and API Reference, please visit
 
 If you prefer to build documentation on your own, refer to [this guide](https://pycytodata.readthedocs.io/en/latest/change/build.html) for more details.
 
-## Latest Release: 0.1.2
+## Latest Release: 0.1.3
 
-This is a minor release that fixes a critical bug that affects all previous releases.
-Update is strongly recommended.
+This is a minor release that fixes a critical bug that affects all previous releases. Update is strongly recommended. A few quality-of-life improvements are included as well.
 
 ### Bug Fixes
 
-- Fixed a critical issue with ``PyCytoData.load_dataset()`` not working due to old web source down ([#3](https://github.com/kevin931/PyCytoData/issues/3))
-    - This issue stems from upstream web source, thus affecting all previous releases.
-    - This update fixes the issue with a different implementation.
-    - There is no implementation change.
+- Fixed a critical issue with subsetting channels not updating internal indices lineage channels.
+- Fixed a verbiage error for subsetting error messages. Now, it is explicitly stated that integer indexing is not supported.
+- Updated documentation to fix typos.
 
 
 ### Changes and New Features
-
-- No new feature added.
+- Updated CI pipeline to include newest Python releases.
+- Added our logo usage policy.
+- Clarified the python version needed to run `PyCytoData`.
+- No new software feature added.
 
 ## References
 
diff --git a/docs/source/change/development.rst b/docs/source/change/development.rst
@@ -16,15 +16,11 @@ Here are our milestones that we would like to achieve for our package!
 Major Milestones
 ------------------
 
-- Integration with Cytomulate
 - Support for more datasets
 - Command-line Interface
 
-Minor Milestones
--------------------
-
-- Magic methods for ``PyCytoData`` class
-- More attributes
+Please see our `GitHub issue tracker <https://github.com/kevin931/PyCytoData/issues>`_ for our
+latest feature requests and work in progress.
 
 ---------
 
diff --git a/docs/source/change/index.rst b/docs/source/change/index.rst
@@ -9,25 +9,26 @@ doing!
 -------------------
 
 *************************
-Latest Release: v0.1.2
+Latest Release: v0.1.3
 *************************
 
-This is a minor release that fixes a critical bug that affects all previous releases.
-Update is strongly recommended.
+This is a minor release that fixes a critical bug that affects all previous releases. Update is strongly recommended. A few quality-of-life improvements are included as well.
 
 Bug Fixes
 -----------
 
-- Fixed a critical issue with ``PyCytoData.load_dataset()`` not working due to old web source down (`#3 <https://github.com/kevin931/PyCytoData/issues/3>`_)
-    - This issue stems from upstream web source, thus affecting all previous releases.
-    - This update fixes the issue with a different implementation.
-    - There is no implementation change.
+- Fixed a critical issue with subsetting channels not updating internal indices lineage channels.
+- Fixed a verbiage error for subsetting error messages. Now, it is explicitly stated that integer indexing is not supported.
+- Updated documentation to fix typos.
 
 
 Changes and New Features
---------------------------
+----------------------------
 
-- No new feature added.
+- Updated CI pipeline to include newest Python releases.
+- Added our logo usage policy.
+- Clarified the python version needed to run `PyCytoData`.
+- No new software feature added.
 
 -------------------------
 
diff --git a/docs/source/change/logo.rst b/docs/source/change/logo.rst
@@ -2,7 +2,7 @@
 Logo Usage
 ========================
 
-../../assets/pycytodata.jpg
+.. image:: ../../assets/pycytodata.jpg
 
 
 We proudly share the `PyCytoData` logo with the community. In fact, in lieu of an MIT license
diff --git a/docs/source/change/releases.rst b/docs/source/change/releases.rst
@@ -6,6 +6,32 @@ Here we include our release notes for past releases in sequential order.
 
 ------------------
 
+*************
+v0.1.3
+*************
+
+
+This is a minor release that fixes a critical bug that affects all previous releases. Update is strongly recommended. A few quality-of-life improvements are included as well.
+
+Bug Fixes
+-----------
+
+- Fixed a critical issue with subsetting channels not updating internal indices lineage channels.
+- Fixed a verbiage error for subsetting error messages. Now, it is explicitly stated that integer indexing is not supported.
+- Updated documentation to fix typos.
+
+
+Changes and New Features
+----------------------------
+
+- Updated CI pipeline to include newest Python releases.
+- Added our logo usage policy.
+- Clarified the python version needed to run `PyCytoData`.
+- No new software feature added.
+
+---------------------
+
+
 ********
 v0.1.2
 ********
diff --git a/meta.yaml b/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "PyCytoData" %}
-{% set version = "0.1.2" %}
+{% set version = "0.1.3" %}
 
 package:
   name: "{{ name|lower }}"
diff --git a/setup.py b/setup.py
@@ -6,7 +6,7 @@
 
 from typing import List
 
-VERSION = "0.1.2"
+VERSION = "0.1.3"
 
 class PypiCommand(distutils.cmd.Command):
     
