diff --git a/.gitignore b/.gitignore
index 8e5f52f..716c207 100644
--- a/.gitignore
+++ b/.gitignore
@@ -13,3 +13,5 @@ kevlar/tests/data/simple-*.counttable
env2/
build/
kevlar/alignment.cpython-*.so
+dist/
+*.egg-info
diff --git a/docs/install.rst b/docs/install.rst
index 9198891..fb33d6c 100644
--- a/docs/install.rst
+++ b/docs/install.rst
@@ -11,7 +11,7 @@ Otherwise, we suggest reading through the entire installation instructions befor
virtualenv kevlar-env
source kevlar-env/bin/activate # Execute this with every new terminal session
- pip install git+https://github.com/dib-lab/khmer.git
+ pip install pysam networkx pandas git+https://github.com/dib-lab/khmer.git
pip install biokevlar
Virtual environment
@@ -21,18 +21,26 @@ We recommend installing **kevlar** and its dependencies in a dedicated `virtual
The command :code:`virtualenv kevlar-env` will create a new virtual environment, and only needs to be executed once.
The command :code:`source kevlar-env/bin/activate` will need to be re-executed any time you open a new session in your terminal.
-.. note:: The label :code:`kevlar-env` can be replaced with an alternative label if desired.
+.. note:: The label ``kevlar-env`` can be replaced with an alternative label if desired.
Dependencies
------------
-The **kevlar** software has three non-standard dependencies: the `networkx package `_, the `pysam `_ package, and the `khmer package `_.
-Currently, the **kevlar** installation procedure handles the first two dependencies automatically, but since it relies on an unreleased version of **khmer** this last dependency must be install manually.
+The **kevlar** software has four non-standard dependencies: the `networkx `_ package, the `pysam `_ package, the `pandas `_ package, and the `khmer package `_.
+The **kevlar** installation procedure *should* handle the first three dependencies automatically, but since it relies on an unreleased version of **khmer** this last dependency must be install manually.
.. code::
pip install git+https://github.com/dib-lab/khmer.git
+.. note::
+
+ In some cases pip cannot install all dependencies automatically, and so manual installation is required.
+
+ .. code::
+
+ pip install pysam networkx pandas git+https://github.com/dib-lab/khmer.git
+
Installation
------------