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hi, I used docker to install the VIP software. But I get this issue when I run VIP.sh. Could you please have a look at this? Thanks.
#######Prepare to generate Columntable########
Fri Jul 8 11:41:34 HKT 2022 /VIP/VIP.sh ####Parsing Sense mode result with TAXI DONE. The process took 0 seconds####
covplot.sh WHP5086_host_removed_R1.fastq.nohost.nobac.sense_nucl.match.sam.addseq.VIRUSES.all.annotated WHP5086_host_removed_R1.fastq.nohost.nobac.sense_nucl.unmatch.fa.prot.m8.addseq.VIRUSES.all.annotated WHP5086_host_removed_R1.fastq sense illumina 15 31 2 ../VIPDB/SENSE.tar.gz/BLASTDB/blastdb_vip_sense
Fri Jul 8 11:41:34 HKT 2022 /VIP/covplot.sh done creating WHP5086_host_removed_R1.fastq.nohost.nobac.sense_nucl.match.sam.addseq.VIRUSES.all.annotated.tempsorted && WHP5086_host_removed_R1.fastq.nohost.nobac.sense_nucl.unmatch.fa.prot.m8.addseq.VIRUSES.all.annotated.tempsorted
Fri Jul 8 11:41:34 HKT 2022 /VIP/covplot.sh done creating temp.all.WHP5086_host_removed_R1.fastq.uniq.genus
sort: cannot read: ./WHP5086_host_removed_R1.fastq.report/temp.WHP5086_host_removed_R1.fastq.covreport: No such file or directory
Fri Jul 8 11:41:34 HKT 2022 /VIP/VIP.sh Preprocess took 85 seconds
Traceback (most recent call last):
File "/VIP/distributionPlot.py", line 52, in
data['Coverage'].plot(kind='bar', width=0.2, color='red', ax=ax, position=1,legend=True)
File "/usr/local/lib/python2.7/dist-packages/pandas/tools/plotting.py", line 3600, in call
**kwds)
File "/usr/local/lib/python2.7/dist-packages/pandas/tools/plotting.py", line 2674, in plot_series
**kwds)
File "/usr/local/lib/python2.7/dist-packages/pandas/tools/plotting.py", line 2470, in _plot
plot_obj.generate()
File "/usr/local/lib/python2.7/dist-packages/pandas/tools/plotting.py", line 1041, in generate
self._compute_plot_data()
File "/usr/local/lib/python2.7/dist-packages/pandas/tools/plotting.py", line 1150, in _compute_plot_data
'plot'.format(numeric_data.class.name))
TypeError: Empty 'DataFrame': no numeric data to plot
htmlGen.pl taxi.WHP5086_host_removed_R1.fastq.table WHP5086_host_removed_R1.fastq sense 85 ../VIPDB/SENSE.tar.gz
file error - vip.tt: not foundPlease check the VIP_report.html under the path: /data\WHP5086_host_removed_R1.fastq.report
The text was updated successfully, but these errors were encountered:
hi, I used docker to install the VIP software. But I get this issue when I run VIP.sh. Could you please have a look at this? Thanks.
#######Prepare to generate Columntable########
Fri Jul 8 11:41:34 HKT 2022 /VIP/VIP.sh ####Parsing Sense mode result with TAXI DONE. The process took 0 seconds####
covplot.sh WHP5086_host_removed_R1.fastq.nohost.nobac.sense_nucl.match.sam.addseq.VIRUSES.all.annotated WHP5086_host_removed_R1.fastq.nohost.nobac.sense_nucl.unmatch.fa.prot.m8.addseq.VIRUSES.all.annotated WHP5086_host_removed_R1.fastq sense illumina 15 31 2 ../VIPDB/SENSE.tar.gz/BLASTDB/blastdb_vip_sense
Fri Jul 8 11:41:34 HKT 2022 /VIP/covplot.sh done creating WHP5086_host_removed_R1.fastq.nohost.nobac.sense_nucl.match.sam.addseq.VIRUSES.all.annotated.tempsorted && WHP5086_host_removed_R1.fastq.nohost.nobac.sense_nucl.unmatch.fa.prot.m8.addseq.VIRUSES.all.annotated.tempsorted
Fri Jul 8 11:41:34 HKT 2022 /VIP/covplot.sh done creating temp.all.WHP5086_host_removed_R1.fastq.uniq.genus
sort: cannot read: ./WHP5086_host_removed_R1.fastq.report/temp.WHP5086_host_removed_R1.fastq.covreport: No such file or directory
Fri Jul 8 11:41:34 HKT 2022 /VIP/VIP.sh Preprocess took 85 seconds
Traceback (most recent call last):
File "/VIP/distributionPlot.py", line 52, in
data['Coverage'].plot(kind='bar', width=0.2, color='red', ax=ax, position=1,legend=True)
File "/usr/local/lib/python2.7/dist-packages/pandas/tools/plotting.py", line 3600, in call
**kwds)
File "/usr/local/lib/python2.7/dist-packages/pandas/tools/plotting.py", line 2674, in plot_series
**kwds)
File "/usr/local/lib/python2.7/dist-packages/pandas/tools/plotting.py", line 2470, in _plot
plot_obj.generate()
File "/usr/local/lib/python2.7/dist-packages/pandas/tools/plotting.py", line 1041, in generate
self._compute_plot_data()
File "/usr/local/lib/python2.7/dist-packages/pandas/tools/plotting.py", line 1150, in _compute_plot_data
'plot'.format(numeric_data.class.name))
TypeError: Empty 'DataFrame': no numeric data to plot
htmlGen.pl taxi.WHP5086_host_removed_R1.fastq.table WHP5086_host_removed_R1.fastq sense 85 ../VIPDB/SENSE.tar.gz
file error - vip.tt: not foundPlease check the VIP_report.html under the path: /data\WHP5086_host_removed_R1.fastq.report
The text was updated successfully, but these errors were encountered: