diff --git a/.github/workflows/lint.yml b/.github/workflows/lint.yml
index 9ab106a..3d81637 100644
--- a/.github/workflows/lint.yml
+++ b/.github/workflows/lint.yml
@@ -1,30 +1,34 @@
-name: Lint
-
+name: Lint workflow
 on:
   push:
     branches: [main, master]
   pull_request:
     branches: [main, master]
+  workflow_dispatch:
 
 permissions:
   contents: read
 
 jobs:
-  ruff:
+  quality:
     runs-on: ubuntu-latest
+
     steps:
-      - uses: actions/checkout@v4
-      
-      - name: Set up Python
-        uses: actions/setup-python@v5
+      - name: Clone repo
+        uses: actions/checkout@v4
+
+      - name: Setup Python environment
+        uses: prefix-dev/setup-pixi@v0.8.14
         with:
-          python-version: '3.11'
-      
-      - name: Install ruff
-        run: pip install ruff
-      
+          environments: >-
+            dev
+          activate-environment: dev
+
       - name: Run ruff check
         run: ruff check .
-      
+
       - name: Run ruff format check
         run: ruff format --check .
+
+      - name: Run snakefmt check
+        run: snakefmt --check --compact-diff .
\ No newline at end of file
diff --git a/.github/workflows/snakeformat.yml b/.github/workflows/snakeformat.yml
deleted file mode 100644
index 3272c1f..0000000
--- a/.github/workflows/snakeformat.yml
+++ /dev/null
@@ -1,27 +0,0 @@
-name: Snakeformat
-
-on:
-  push:
-    branches: [main, master]
-  pull_request:
-    branches: [main, master]
-
-permissions:
-  contents: read
-
-jobs:
-  snakeformat:
-    runs-on: ubuntu-latest
-    steps:
-      - uses: actions/checkout@v4
-      
-      - name: Set up Python
-        uses: actions/setup-python@v5
-        with:
-          python-version: '3.11'
-      
-      - name: Install snakefmt
-        run: pip install snakefmt
-      
-      - name: Run snakefmt check
-        run: snakefmt --check --compact-diff .