diff --git a/R/conos.R b/R/conos.R index 688249f..012d4af 100644 --- a/R/conos.R +++ b/R/conos.R @@ -48,7 +48,7 @@ scaledMatricesP2 <- function(p2.objs, data.type, od.genes, var.scale) { #' @keywords internal scaledMatricesSeurat <- function(so.objs, data.type, od.genes, var.scale) { if (var.scale) { - so.objs <- lapply(so.objs, function(so){ ScaleData(so, features = rownames(so))}) + so.objs <- lapply(so.objs, function(so){ Seurat::ScaleData(so, features = rownames(so))}) } if (data.type == 'scaled') { @@ -67,7 +67,7 @@ scaledMatricesSeurat <- function(so.objs, data.type, od.genes, var.scale) { scaledMatricesSeuratV3 <- function(so.objs, data.type, od.genes, var.scale, neighborhood.average) { checkSeuratV3() if (var.scale) { - so.objs <- lapply(so.objs, function(so){ ScaleData(so, features = rownames(so))}) + so.objs <- lapply(so.objs, function(so){ Seurat::ScaleData(so, features = rownames(so))}) } slot <- switch( EXPR = data.type,