Test the genome scan workflow on a new dataset beyond the bundled Ag1000G subset.
- Identify a suitable publicly available dataset (e.g. 1000 Genomes, DPGP, etc.)
- Run
examples/genome_scan.py end-to-end with both VCF and zarr input
- Verify population assignment and two-population statistics work correctly
- Confirm figure output looks reasonable
Test the genome scan workflow on a new dataset beyond the bundled Ag1000G subset.
examples/genome_scan.pyend-to-end with both VCF and zarr input