diff --git a/.Rbuildignore b/.Rbuildignore index 7cac0df..62f37ca 100644 --- a/.Rbuildignore +++ b/.Rbuildignore @@ -1,3 +1,5 @@ +revdep +joss_paper data-raw ^cran-comments\.md$ ^\.github$ diff --git a/.gitignore b/.gitignore index 218b942..9d1f920 100644 --- a/.gitignore +++ b/.gitignore @@ -4,3 +4,4 @@ inst/doc /doc/ /Meta/ .run_codecov.R +revdep diff --git a/DESCRIPTION b/DESCRIPTION index 88d9f24..501ad89 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,7 +1,7 @@ Package: growR Type: Package -Version: 1.2.0.9005 -Date: 2023-11-21 +Version: 1.3.0 +Date: 2024-05-23 Authors@R: person( given = "Kevin", family = "Kramer", diff --git a/NEWS.md b/NEWS.md index 77cdf52..fb2fe0f 100644 --- a/NEWS.md +++ b/NEWS.md @@ -1,10 +1,10 @@ -# growR 1.2.0.9000 +# growR 1.3.0 ## Added -* Additional option for determination of growing season start is available +* An additional option for determination of growing season start is available through `ModvegeSite$set_SGS_method. This comes with a different available - definition of the temperature sum and is reflected in the methods + definition of the temperature sum and is reflected in the new methods `start_of_growing_season`, `start_of_growing_season_mtd`, `weighted_temperature_sum`. diff --git a/README.md b/README.md index 01c37ef..5589e01 100644 --- a/README.md +++ b/README.md @@ -4,7 +4,7 @@ [![Documentation](https://badgen.net/badge/Documentation/github.io/cyan)](https://kuadrat.github.io/growR/) [![R-CMD-check](https://github.com/kuadrat/growR/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/kuadrat/growR/actions/workflows/R-CMD-check.yaml) [![codecov](https://codecov.io/gh/kuadrat/growR/graph/badge.svg?token=65OACJW5FV)](https://app.codecov.io/gh/kuadrat/growR) - [![status](https://joss.theoj.org/papers/bd4b3a207a8d4de1dc784dba702e38fc/status.svg)](https://joss.theoj.org/papers/bd4b3a207a8d4de1dc784dba702e38fc) + [![status](https://joss.theoj.org/papers/bd4b3a207a8d4de1dc784dba702e38fc/status.svg)](https://joss.theoj.org/papers/10.21105/joss.06260) ![](man/figures/logo.png) diff --git a/_pkgdown.yml b/_pkgdown.yml index c087890..61e62dc 100644 --- a/_pkgdown.yml +++ b/_pkgdown.yml @@ -94,4 +94,8 @@ reference: - parse_year_strings - posieux_weather - set_growR_verbosity + - start_of_growing_season + - start_of_growing_season_mtd + - weighted_temperature_sum - yield_parameters + diff --git a/cran-comments.md b/cran-comments.md new file mode 100644 index 0000000..7029498 --- /dev/null +++ b/cran-comments.md @@ -0,0 +1,48 @@ +## R CMD check results + +0 errors | 0 warnings | 0-2 notes + +* ``` + checking CRAN incoming feasibility ...Warning: unable to access index for repository https://bioconductor.org/packages/3.16/bioc/src/contrib: + cannot open URL 'https://bioconductor.org/packages/3.16/bioc/src/contrib/PACKAGES' + Warning: unable to access index for repository https://bioconductor.org/packages/3.16/data/annotation/src/contrib: + cannot open URL 'https://bioconductor.org/packages/3.16/data/annotation/src/contrib/PACKAGES' + Warning: unable to access index for repository https://bioconductor.org/packages/3.16/data/experiment/src/contrib: + cannot open URL 'https://bioconductor.org/packages/3.16/data/experiment/src/contrib/PACKAGES' + Warning in url(sprintf("%s/src/contrib/PACKAGES.gz", u), "rb") : + URL 'https://mghp.osn.xsede.org/bir190004-bucket01/archive.bioconductor.org/packages/3.16/bioc/src/contrib/PACKAGES.gz': Timeout of 60 seconds was reached + NB: need Internet access to use CRAN incoming checks + NOTE + Maintainer: ‘Kevin Kramer ’ + + Possibly misspelled words in DESCRIPTION: + Baumont (13:48) + Carrère (13:32) + Jouven (13:17) + ModVege (11:47, 13:8, 17:73) + ``` + + bioconductor seems to be unreachable from my location. However, growR does + not depend or (to my knowledge) interact with bioconductor at all, so this + should not be cause for an issue. + The spelling of these words (names) is fine. + +* ``` + Found the following (possibly) invalid URLs: + URL: https://rmets.onlinelibrary.wiley.com/doi/abs/10.1002/joc.2419 + From: man/willmott.Rd + Status: 403 + Message: Forbidden + ``` + + It seems that Wiley has recently started to use more extensive CAPTCHA and + similar human-verification checks. This seems to sometimes (and only + sometimes) prevent R CMD CHECK from accessing these links. + +## revdepcheck results + +We checked 0 reverse dependencies, comparing R CMD check results across CRAN and dev versions of this package. + + * We saw 0 new problems + * We failed to check 0 packages +