diff --git a/README.md b/README.md index cc50ebdf2..b9fc2c627 100644 --- a/README.md +++ b/README.md @@ -27,7 +27,8 @@ To import your imaging files in the import gui type in the mounted `/data/..` ## Clone and Run Codebase (for Developers) #### 1. Checkout Project -`git clone https://github.com/labsyspharm/minerva_analysis.git` +* `git clone https://github.com/labsyspharm/minerva_analysis.git` +* `cd minerva_analysis` #### 2. Checkout Necessary Branch * **For Gating, run** `git checkout gating` * Run `git pull` to make sure everything is up to date diff --git a/package_mac.sh b/package_mac.sh index 53c58f7fe..74a564e9e 100755 --- a/package_mac.sh +++ b/package_mac.sh @@ -1 +1 @@ -pyinstaller -F --paths $CONDA_PREFIX --add-data "minerva_analysis/client:minerva_analysis/client" --add-data "minerva_analysis/__init__.py:minerva_analysis/" --add-data "minerva_analysis/server:minerva_analysis/server" --add-data "$CONDA_PREFIX/lib/python3.9/site-packages/xmlschema/schemas:xmlschema/schemas" --add-data "$CONDA_PREFIX/lib/python3.9/site-packages/ome_types:ome_types" --hidden-import "scipy.spatial.transform._rotation_groups" --hidden-import "sqlalchemy.sql.default_comparator" --hidden-import "sklearn.neighbors._partition_nodes" --hidden-import "sklearn.neighbors.ball_tree" --hidden-import "sklearn.utils._typedefs" --hidden-import "cmath" --hidden-import "imagecodecs._shared" --hidden-import "imagecodecs._imcd" --name $1 run.py +pyinstaller -F --paths $CONDA_PREFIX --add-data "minerva_analysis/client:minerva_analysis/client" --add-data "minerva_analysis/__init__.py:minerva_analysis/" --add-data "minerva_analysis/server:minerva_analysis/server" --add-data "$CONDA_PREFIX/lib/python3.9/site-packages/xmlschema/schemas:xmlschema/schemas" --add-data "$CONDA_PREFIX/lib/python3.9/site-packages/ome_types:ome_types" --hidden-import "scipy.special._cdflib" --hidden-import "scipy.spatial.transform._rotation_groups" --hidden-import "sqlalchemy.sql.default_comparator" --hidden-import "sklearn.neighbors._partition_nodes" --hidden-import "sklearn.neighbors.ball_tree" --hidden-import "sklearn.utils._typedefs" --hidden-import "cmath" --hidden-import "imagecodecs._shared" --hidden-import "imagecodecs._imcd" --name $1 run.py diff --git a/package_win.bat b/package_win.bat index 1b2a89cf0..8b838e75c 100644 --- a/package_win.bat +++ b/package_win.bat @@ -1 +1 @@ -pyinstaller -F --paths $env:CONDA_PREFIX --add-data "minerva_analysis/client;minerva_analysis/client" --add-data "minerva_analysis/server;minerva_analysis/server" --add-data "%CONDA_PREFIX%/Lib/site-packages/xmlschema/schemas;xmlschema/schemas" --add-data "%CONDA_PREFIX%/Lib/site-packages/ome_types;ome_types" --hidden-import="scipy.spatial.transform._rotation_groups" --hidden-import="cmath" --hidden-import="sqlalchemy.sql.default_comparator" --hidden-import="sklearn.utils._typedefs" --hidden-import="sklearn.neighbors._partition_nodes" --hidden-import="sklearn.neighbors.ball_tree" --hidden-import="imagecodecs._shared" --hidden-import="imagecodecs._imcd" --icon icon.ico --name minerva_analysis_windows run.py +pyinstaller -F --paths $env:CONDA_PREFIX --add-data "minerva_analysis/client;minerva_analysis/client" --add-data "minerva_analysis/server;minerva_analysis/server" --add-data "%CONDA_PREFIX%/Lib/site-packages/xmlschema/schemas;xmlschema/schemas" --add-data "%CONDA_PREFIX%/Lib/site-packages/ome_types;ome_types" --hidden-import="scipy.special._cdflib" --hidden-import="scipy.spatial.transform._rotation_groups" --hidden-import="cmath" --hidden-import="sqlalchemy.sql.default_comparator" --hidden-import="sklearn.utils._typedefs" --hidden-import="sklearn.neighbors._partition_nodes" --hidden-import="sklearn.neighbors.ball_tree" --hidden-import="imagecodecs._shared" --hidden-import="imagecodecs._imcd" --icon icon.ico --name minerva_analysis_windows run.py