Dockerfile

FROM python:3.5
MAINTAINER Andre Lamurias (alamurias@lasige.di.fc.ul.pt)

RUN apt-get update && apt-get install -y git && apt-get autoclean -y
RUN apt-get update && apt-get install -y wget && apt-get autoclean -y
RUN apt-get update && apt-get install -y unrar-free && apt-get autoclean -y

#RUN echo "deb http://http.debian.net/debian jessie-backports main" | \
#      tee --append /etc/apt/sources.list.d/jessie-backports.list > /dev/null
#RUN apt-get update && apt-get install -y -t jessie-backports openjdk-8-jdk
#RUN update-java-alternatives -s java-1.8.0-openjdk-amd64
RUN apt-get update && apt-get install -y default-jdk && apt-get autoclean -y


COPY ./requirements.txt ./
RUN pip3 install -r requirements.txt
RUN git clone https://github.com/AndreLamurias/obonet.git
RUN cd obonet && python3 setup.py install



#RUN mkdir temp/
#RUN mkdir candidates/


#COPY chebi_pop chebi_pop
#COPY hpo_pop hpo_pop
#COPY ChebiPatents/ ChebiPatents/