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Hi,
I want to test racon_wrapper v1.5.0, with the following command:
racon_wrapper \\ -t ${task.cpus} \\ -u --no-trimming \\ --split 16000000 \\ ${fastq_file} ${sam_file} ${genome_file} 1> ${file_name}.racon_polished.fa
Unfortunately, this is the output error:
usage: racon_wrapper [-h] [--split SPLIT] [--subsample SUBSAMPLE SUBSAMPLE] [-u] [-f] [-w WINDOW_LENGTH] [-q QUALITY_THRESHOLD] [-e ERROR_THRESHOLD] [-m MATCH] [-x MISMATCH] [-g GAP] [-t THREADS] [--cudaaligner-band-width CUDAALIGNER_BAND_WIDTH] [--cudaaligner-batches CUDAALIGNER_BATCHES] [-c CUDAPOA_BATCHES] [-b] sequences overlaps target_sequences racon_wrapper: error: unrecognized arguments: --no-trimming
So I want to ask, is this the expected behaviour and I should not use the --no-trimming parameter?
Kind regards, Salvador
The text was updated successfully, but these errors were encountered:
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Hi,
I want to test racon_wrapper v1.5.0, with the following command:
Unfortunately, this is the output error:
So I want to ask, is this the expected behaviour and I should not use the --no-trimming parameter?
Kind regards,
Salvador
The text was updated successfully, but these errors were encountered: