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Makefile
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Makefile
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# Top level Makefile for HMMER3
#
# On most systems, to build H3 you should only need:
# % ./configure; make
#
# Optionally, you can run a test suite:
# % make check
#
# Optionally, you can install programs and man pages more permanently:
# % make install
#
# Optionally, you can install some small tools ("miniapps") from our Easel library:
# % (cd easel; make install)
#
# For more information, see the Installation section in the User's Guide.
#
# VPATH and shell configuration
#
top_srcdir = /Users/igomedeiros/Projects/pipa/Pipa/pipa_090421/modules/hmmer-3.3.2/.
srcdir = /Users/igomedeiros/Projects/pipa/Pipa/pipa_090421/modules/hmmer-3.3.2/.
VPATH = /Users/igomedeiros/Projects/pipa/Pipa/pipa_090421/modules/hmmer-3.3.2/.
SHELL = /bin/sh
# location of easel
ESLDIR = easel
# location of libdivsufsort for suffix array creation
SADIR = libdivsufsort
# Package information
#
PACKAGE = HMMER
PACKAGE_VERSION = 3.3.2
PACKAGE_TARNAME = hmmer
# Installation targets
#
prefix = /Users/igomedeiros/Projects/pipa/Pipa/pipa_090421/modules/hmmer-3.3.2
exec_prefix = ${prefix}
datarootdir = ${prefix}/share
bindir = ${exec_prefix}/bin
libdir = ${exec_prefix}/lib
includedir = ${prefix}/include
mandir = ${datarootdir}/man
docdir = ${datarootdir}/doc/${PACKAGE_TARNAME}
pdfdir = ${docdir}
mandir = ${datarootdir}/man
man1dir = ${mandir}/man1
man1ext = .1
# Compiler configuration
#
CC = gcc
CFLAGS = -O3
PTHREAD_CFLAGS = -pthread
SSE_CFLAGS =
VMX_CFLAGS =
LDFLAGS = -static
CPPFLAGS =
# Other tools
#
AR = /usr/bin/ar
RANLIB = ranlib
INSTALL = /usr/bin/install -c
# beautification magic stolen from git
#
QUIET_SUBDIR0 = +${MAKE} -C #space separator after -c
QUIET_SUBDIR1 =
ifndef V
QUIET = @
QUIET_CC = @echo ' ' CC $@;
QUIET_GEN = @echo ' ' GEN $@;
QUIET_AR = @echo ' ' AR $@;
QUIET_SUBDIR0 = +@subdir=
QUIET_SUBDIR1 = ; echo ' ' SUBDIR $$subdir; \
${MAKE} -s -C $$subdir
endif
.PHONY: all dev check pdf install install-strip uninstall clean distclean TAGS
# all: Compile all documented executables.
# (Excludes test programs.)
#
all:
${QUIET_SUBDIR0}${ESLDIR} ${QUIET_SUBDIR1} all
${QUIET_SUBDIR0}${SADIR} ${QUIET_SUBDIR1} all
${QUIET_SUBDIR0}src ${QUIET_SUBDIR1} all
${QUIET_SUBDIR0}profmark ${QUIET_SUBDIR1} all
# dev: compile all executables, including drivers.
#
dev:
${QUIET_SUBDIR0}${ESLDIR} ${QUIET_SUBDIR1} dev
${QUIET_SUBDIR0}${SADIR} ${QUIET_SUBDIR1} all
${QUIET_SUBDIR0}src ${QUIET_SUBDIR1} dev
${QUIET_SUBDIR0}profmark ${QUIET_SUBDIR1} dev
# tests: compile all test drivers for 'make check'
#
tests:
${QUIET_SUBDIR0}${ESLDIR} ${QUIET_SUBDIR1} tests
${QUIET_SUBDIR0}src ${QUIET_SUBDIR1} tests
# check: Run test suites.
#
check:
@command -v python3 >/dev/null 2>&1 || { echo >&2 "python3 is required for 'make check', but is not in your PATH. Aborting."; exit 1; }
${QUIET_SUBDIR0}${ESLDIR} ${QUIET_SUBDIR1} tests
${QUIET_SUBDIR0}${SADIR} ${QUIET_SUBDIR1} all
${QUIET_SUBDIR0}src ${QUIET_SUBDIR1} tests
${QUIET_SUBDIR0}${ESLDIR} ${QUIET_SUBDIR1} check
${QUIET_SUBDIR0}testsuite ${QUIET_SUBDIR1} check
# pdf: compile the User Guides.
#
pdf:
${QUIET_SUBDIR0}documentation ${QUIET_SUBDIR1} pdf
# install: binaries in ${bindir}/, man pages in ${man1dir}/
# Creates these directories if they don't exist.
#
# Prefix paths with optional ${DESTDIR}, which
# downstream packagers may set on make command line when
# building packages.
#
# Does not use quiet beautification magic; always verbose.
install: all
${INSTALL} -d ${DESTDIR}${bindir}
${INSTALL} -d ${DESTDIR}${man1dir}
${MAKE} -C src install
${MAKE} -C documentation install
# install-strip: same as install, but strip binaries
#
install-strip: all
${INSTALL} -d ${DESTDIR}${bindir}
${INSTALL} -d ${DESTDIR}${man1dir}
${MAKE} -C src install-strip
${MAKE} -C documentation install
# uninstall: reverses the steps of "make install".
#
uninstall:
${MAKE} -C src uninstall
${MAKE} -C documentation uninstall
# "make clean" removes almost everything except configuration files.
#
clean:
${QUIET_SUBDIR0}src ${QUIET_SUBDIR1} clean
${QUIET_SUBDIR0}profmark ${QUIET_SUBDIR1} clean
${QUIET_SUBDIR0}testsuite ${QUIET_SUBDIR1} clean
${QUIET_SUBDIR0}documentation ${QUIET_SUBDIR1} clean
${QUIET_SUBDIR0}${ESLDIR} ${QUIET_SUBDIR1} clean
${QUIET_SUBDIR0}${SADIR} ${QUIET_SUBDIR1} clean
${QUIET}-rm -f *.o *~ Makefile.bak core TAGS TAGS.part gmon.out
ifndef V
@echo ' ' CLEAN hmmer
endif
# "make distclean" leaves a pristine source distribution.
#
distclean:
${QUIET_SUBDIR0}src ${QUIET_SUBDIR1} distclean
${QUIET_SUBDIR0}profmark ${QUIET_SUBDIR1} distclean
${QUIET_SUBDIR0}testsuite ${QUIET_SUBDIR1} distclean
${QUIET_SUBDIR0}documentation ${QUIET_SUBDIR1} distclean
${QUIET_SUBDIR0}${ESLDIR} ${QUIET_SUBDIR1} distclean
${QUIET_SUBDIR0}${SADIR} ${QUIET_SUBDIR1} distclean
${QUIET}-rm config.log config.status
${QUIET}-rm -rf autom4te.cache
${QUIET}-rm -f *.o *~ Makefile.bak core TAGS TAGS.part gmon.out
${QUIET}-rm -f cscope.po.out cscope.out cscope.in.out cscope.files
${QUIET}-rm -f src/impl
${QUIET}-rm Makefile
ifndef V
@echo ' ' CLEAN hmmer
endif
TAGS:
./makeTAGS.sh