diff --git a/NEWS.md b/NEWS.md index fbfeb601..b823cb54 100644 --- a/NEWS.md +++ b/NEWS.md @@ -74,7 +74,7 @@ Changes to paftools.js: Although given the many bug fixes and minor improvements, the core algorithm stays the same. This version of minimap2 produces nearly identical alignments -to v2.17 except corner cases. +to v2.17 except very rare corner cases. Now unimap is recommended over minimap2 for aligning long contigs against a reference genome. It often takes less wall-clock time and is much more diff --git a/README.md b/README.md index ae6eac50..9b4dfe94 100644 --- a/README.md +++ b/README.md @@ -76,8 +76,8 @@ Detailed evaluations are available from the [minimap2 paper][doi] or the Minimap2 is optimized for x86-64 CPUs. You can acquire precompiled binaries from the [release page][release] with: ```sh -curl -L https://github.com/lh3/minimap2/releases/download/v2.17/minimap2-2.17_x64-linux.tar.bz2 | tar -jxvf - -./minimap2-2.17_x64-linux/minimap2 +curl -L https://github.com/lh3/minimap2/releases/download/v2.18/minimap2-2.18_x64-linux.tar.bz2 | tar -jxvf - +./minimap2-2.18_x64-linux/minimap2 ``` If you want to compile from the source, you need to have a C compiler, GNU make and zlib development files installed. Then type `make` in the source code diff --git a/cookbook.md b/cookbook.md index 6cb4d5fa..f963cccf 100644 --- a/cookbook.md +++ b/cookbook.md @@ -31,8 +31,8 @@ To acquire the data used in this cookbook and to install minimap2 and paftools, please follow the command lines below: ```sh # install minimap2 executables -curl -L https://github.com/lh3/minimap2/releases/download/v2.17/minimap2-2.17_x64-linux.tar.bz2 | tar jxf - -cp minimap2-2.17_x64-linux/{minimap2,k8,paftools.js} . # copy executables +curl -L https://github.com/lh3/minimap2/releases/download/v2.18/minimap2-2.18_x64-linux.tar.bz2 | tar jxf - +cp minimap2-2.18_x64-linux/{minimap2,k8,paftools.js} . # copy executables export PATH="$PATH:"`pwd` # put the current directory on PATH # download example datasets curl -L https://github.com/lh3/minimap2/releases/download/v2.10/cookbook-data.tgz | tar zxf - diff --git a/main.c b/main.c index 7c9255ca..395c0d97 100644 --- a/main.c +++ b/main.c @@ -7,7 +7,7 @@ #include "mmpriv.h" #include "ketopt.h" -#define MM_VERSION "2.17-r1013-dirty" +#define MM_VERSION "2.18-r1015" #ifdef __linux__ #include diff --git a/minimap2.1 b/minimap2.1 index 9e555433..f1327804 100644 --- a/minimap2.1 +++ b/minimap2.1 @@ -1,4 +1,4 @@ -.TH minimap2 1 "4 May 2019" "minimap2-2.17 (r941)" "Bioinformatics tools" +.TH minimap2 1 "9 April 2021" "minimap2-2.18 (r1015)" "Bioinformatics tools" .SH NAME .PP minimap2 - mapping and alignment between collections of DNA sequences diff --git a/misc/paftools.js b/misc/paftools.js index 111e96d5..13e9b6d7 100755 --- a/misc/paftools.js +++ b/misc/paftools.js @@ -1,6 +1,6 @@ #!/usr/bin/env k8 -var paftools_version = '2.17-r982-dirty'; +var paftools_version = '2.18-r1015'; /***************************** ***** Library functions ***** diff --git a/python/mappy.pyx b/python/mappy.pyx index 32735144..fbbc8ab8 100644 --- a/python/mappy.pyx +++ b/python/mappy.pyx @@ -3,7 +3,7 @@ from libc.stdlib cimport free cimport cmappy import sys -__version__ = '2.17' +__version__ = '2.18' cmappy.mm_reset_timer() diff --git a/setup.py b/setup.py index e4959ec9..960775af 100644 --- a/setup.py +++ b/setup.py @@ -23,7 +23,7 @@ def readme(): setup( name = 'mappy', - version = '2.17', + version = '2.18', url = 'https://github.com/lh3/minimap2', description = 'Minimap2 python binding', long_description = readme(),