diff --git a/poetry.lock b/poetry.lock
index dd05e21..a49bf78 100644
--- a/poetry.lock
+++ b/poetry.lock
@@ -16,15 +16,15 @@ multidict = ">=4.5,<7.0"
 yarl = ">=1.0,<2.0"
 
 [package.extras]
-speedups = ["Brotli", "aiodns", "cchardet"]
+speedups = ["aiodns", "brotli", "cchardet"]
 
 [[package]]
 name = "aiosignal"
-version = "1.2.0"
+version = "1.3.1"
 description = "aiosignal: a list of registered asynchronous callbacks"
 category = "main"
 optional = false
-python-versions = ">=3.6"
+python-versions = ">=3.7"
 
 [package.dependencies]
 frozenlist = ">=1.1.0"
@@ -58,8 +58,8 @@ idna = ">=2.8"
 sniffio = ">=1.1"
 
 [package.extras]
-doc = ["packaging", "sphinx-autodoc-typehints (>=1.2.0)", "sphinx-rtd-theme"]
-test = ["contextlib2", "coverage[toml] (>=4.5)", "hypothesis (>=4.0)", "mock (>=4)", "pytest (>=7.0)", "pytest-mock (>=3.6.1)", "trustme", "uvloop (<0.15)", "uvloop (>=0.15)"]
+doc = ["packaging", "sphinx-rtd-theme", "sphinx-autodoc-typehints (>=1.2.0)"]
+test = ["coverage[toml] (>=4.5)", "hypothesis (>=4.0)", "pytest (>=7.0)", "pytest-mock (>=3.6.1)", "trustme", "contextlib2", "uvloop (<0.15)", "mock (>=4)", "uvloop (>=0.15)"]
 trio = ["trio (>=0.16,<0.22)"]
 
 [[package]]
@@ -90,8 +90,8 @@ python-versions = ">=3.6"
 argon2-cffi-bindings = "*"
 
 [package.extras]
-dev = ["cogapp", "coverage[toml] (>=5.0.2)", "furo", "hypothesis", "pre-commit", "pytest", "sphinx", "sphinx-notfound-page", "tomli"]
-docs = ["furo", "sphinx", "sphinx-notfound-page"]
+dev = ["pre-commit", "cogapp", "tomli", "coverage[toml] (>=5.0.2)", "hypothesis", "pytest", "sphinx", "sphinx-notfound-page", "furo"]
+docs = ["sphinx", "sphinx-notfound-page", "furo"]
 tests = ["coverage[toml] (>=5.0.2)", "hypothesis", "pytest"]
 
 [[package]]
@@ -106,7 +106,7 @@ python-versions = ">=3.6"
 cffi = ">=1.0.1"
 
 [package.extras]
-dev = ["cogapp", "pre-commit", "pytest", "wheel"]
+dev = ["pytest", "cogapp", "pre-commit", "wheel"]
 tests = ["pytest"]
 
 [[package]]
@@ -151,10 +151,10 @@ optional = false
 python-versions = ">=3.5"
 
 [package.extras]
-dev = ["cloudpickle", "coverage[toml] (>=5.0.2)", "furo", "hypothesis", "mypy (>=0.900,!=0.940)", "pre-commit", "pympler", "pytest (>=4.3.0)", "pytest-mypy-plugins", "sphinx", "sphinx-notfound-page", "zope.interface"]
-docs = ["furo", "sphinx", "sphinx-notfound-page", "zope.interface"]
-tests = ["cloudpickle", "coverage[toml] (>=5.0.2)", "hypothesis", "mypy (>=0.900,!=0.940)", "pympler", "pytest (>=4.3.0)", "pytest-mypy-plugins", "zope.interface"]
-tests-no-zope = ["cloudpickle", "coverage[toml] (>=5.0.2)", "hypothesis", "mypy (>=0.900,!=0.940)", "pympler", "pytest (>=4.3.0)", "pytest-mypy-plugins"]
+dev = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "mypy (>=0.900,!=0.940)", "pytest-mypy-plugins", "zope.interface", "furo", "sphinx", "sphinx-notfound-page", "pre-commit", "cloudpickle"]
+docs = ["furo", "sphinx", "zope.interface", "sphinx-notfound-page"]
+tests = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "mypy (>=0.900,!=0.940)", "pytest-mypy-plugins", "zope.interface", "cloudpickle"]
+tests_no_zope = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "mypy (>=0.900,!=0.940)", "pytest-mypy-plugins", "cloudpickle"]
 
 [[package]]
 name = "babel"
@@ -216,14 +216,14 @@ requests = "*"
 tqdm = "*"
 
 [package.extras]
-align = ["beautifulsoup4", "class-resolver", "defusedxml", "pyyaml", "tabulate"]
-charts = ["matplotlib", "matplotlib-venn", "pandas", "seaborn"]
-docs = ["autodoc-pydantic", "sphinx", "sphinx-autodoc-typehints", "sphinx-automodapi", "sphinx-click", "sphinx-rtd-theme"]
-export = ["ndex2", "pyyaml", "rdflib", "rdflib-jsonld"]
+align = ["pyyaml", "beautifulsoup4", "tabulate", "defusedxml", "class-resolver"]
+charts = ["matplotlib", "matplotlib-venn", "seaborn", "pandas"]
+docs = ["sphinx", "sphinx-rtd-theme", "sphinx-click", "sphinx-autodoc-typehints", "sphinx-automodapi", "autodoc-pydantic"]
+export = ["pyyaml", "rdflib", "rdflib-jsonld", "ndex2"]
 gha = ["more-itertools"]
-health = ["click-default-group", "pandas", "pyyaml", "tabulate"]
-tests = ["coverage", "more-itertools", "pytest"]
-web = ["bootstrap-flask (<=2.0.0)", "flasgger", "flask", "markdown", "pyyaml", "rdflib", "rdflib-jsonld"]
+health = ["click-default-group", "pandas", "tabulate", "pyyaml"]
+tests = ["coverage", "pytest", "more-itertools"]
+web = ["pyyaml", "rdflib", "rdflib-jsonld", "flask", "flasgger", "bootstrap-flask (<=2.0.0)", "markdown"]
 
 [[package]]
 name = "bleach"
@@ -239,7 +239,7 @@ webencodings = "*"
 
 [package.extras]
 css = ["tinycss2 (>=1.1.0,<1.2)"]
-dev = ["Sphinx (==4.3.2)", "black (==22.3.0)", "build (==0.8.0)", "flake8 (==4.0.1)", "hashin (==0.17.0)", "mypy (==0.961)", "pip-tools (==6.6.2)", "pytest (==7.1.2)", "tox (==3.25.0)", "twine (==4.0.1)", "wheel (==0.37.1)"]
+dev = ["build (==0.8.0)", "flake8 (==4.0.1)", "hashin (==0.17.0)", "pip-tools (==6.6.2)", "pytest (==7.1.2)", "Sphinx (==4.3.2)", "tox (==3.25.0)", "twine (==4.0.1)", "wheel (==0.37.1)", "black (==22.3.0)", "mypy (==0.961)"]
 
 [[package]]
 name = "certifi"
@@ -288,7 +288,7 @@ optional = false
 python-versions = ">=3.6.0"
 
 [package.extras]
-unicode-backport = ["unicodedata2"]
+unicode_backport = ["unicodedata2"]
 
 [[package]]
 name = "class-resolver"
@@ -301,10 +301,10 @@ python-versions = ">=3.7"
 [package.extras]
 click = ["click"]
 docdata = ["docdata"]
-docs = ["sphinx", "sphinx-autodoc-typehints", "sphinx-automodapi", "sphinx-rtd-theme"]
+docs = ["sphinx", "sphinx-rtd-theme", "sphinx-autodoc-typehints", "sphinx-automodapi"]
 numpy = ["numpy"]
 optuna = ["optuna"]
-ray = ["ray[tune]"]
+ray = ["ray"]
 tests = ["coverage", "pytest"]
 torch = ["torch"]
 
@@ -351,10 +351,10 @@ pytrie = "*"
 requests = "*"
 
 [package.extras]
-bioregistry = ["bioregistry (>=0.5.136)"]
-docs = ["sphinx", "sphinx-autodoc-typehints", "sphinx-automodapi", "sphinx-rtd-theme"]
-pandas = ["pandas"]
 tests = ["coverage", "pytest"]
+pandas = ["pandas"]
+docs = ["sphinx-automodapi", "sphinx-autodoc-typehints", "sphinx-rtd-theme", "sphinx"]
+bioregistry = ["bioregistry (>=0.5.136)"]
 
 [[package]]
 name = "debugpy"
@@ -392,7 +392,7 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
 wrapt = ">=1.10,<2"
 
 [package.extras]
-dev = ["PyTest", "PyTest (<5)", "PyTest-Cov", "PyTest-Cov (<2.6)", "bump2version (<1)", "configparser (<5)", "importlib-metadata (<3)", "importlib-resources (<4)", "sphinx (<2)", "sphinxcontrib-websupport (<2)", "tox", "zipp (<2)"]
+dev = ["tox", "bump2version (<1)", "sphinx (<2)", "importlib-metadata (<3)", "importlib-resources (<4)", "configparser (<5)", "sphinxcontrib-websupport (<2)", "zipp (<2)", "PyTest (<5)", "PyTest-Cov (<2.6)", "pytest", "pytest-cov"]
 
 [[package]]
 name = "deprecation"
@@ -465,7 +465,7 @@ optional = false
 python-versions = "*"
 
 [package.extras]
-tests = ["asttokens", "littleutils", "pytest", "rich"]
+tests = ["asttokens", "pytest", "littleutils", "rich"]
 
 [[package]]
 name = "fastjsonschema"
@@ -476,7 +476,7 @@ optional = false
 python-versions = "*"
 
 [package.extras]
-devel = ["colorama", "json-spec", "jsonschema", "pylint", "pytest", "pytest-benchmark", "pytest-cache", "validictory"]
+devel = ["colorama", "jsonschema", "json-spec", "pylint", "pytest", "pytest-benchmark", "pytest-cache", "validictory"]
 
 [[package]]
 name = "fastobo"
@@ -508,7 +508,7 @@ python-versions = ">=2.7, !=3.0, !=3.1, !=3.2, !=3.3, !=3.4, <4"
 
 [[package]]
 name = "frozenlist"
-version = "1.3.1"
+version = "1.3.3"
 description = "A list-like structure which implements collections.abc.MutableSequence"
 category = "main"
 optional = false
@@ -516,7 +516,7 @@ python-versions = ">=3.7"
 
 [[package]]
 name = "fsspec"
-version = "2022.10.0"
+version = "2022.11.0"
 description = "File-system specification"
 category = "main"
 optional = false
@@ -531,7 +531,7 @@ abfs = ["adlfs"]
 adl = ["adlfs"]
 arrow = ["pyarrow (>=1)"]
 dask = ["dask", "distributed"]
-dropbox = ["dropbox", "dropboxdrivefs", "requests"]
+dropbox = ["dropboxdrivefs", "requests", "dropbox"]
 entrypoints = ["importlib-metadata"]
 fuse = ["fusepy"]
 gcs = ["gcsfs"]
@@ -540,7 +540,7 @@ github = ["requests"]
 gs = ["gcsfs"]
 gui = ["panel"]
 hdfs = ["pyarrow (>=1)"]
-http = ["aiohttp (!=4.0.0a0,!=4.0.0a1)", "requests"]
+http = ["requests", "aiohttp (!=4.0.0a0,!=4.0.0a1)"]
 libarchive = ["libarchive-c"]
 oci = ["ocifs"]
 s3 = ["s3fs"]
@@ -576,7 +576,7 @@ python-versions = "*"
 python-dateutil = ">=2.8.1"
 
 [package.extras]
-dev = ["flake8", "markdown", "twine", "wheel"]
+dev = ["wheel", "flake8", "markdown", "twine"]
 
 [[package]]
 name = "graphviz"
@@ -587,9 +587,9 @@ optional = false
 python-versions = ">=3.7"
 
 [package.extras]
-dev = ["flake8", "pep8-naming", "tox (>=3)", "twine", "wheel"]
+dev = ["tox (>=3)", "flake8", "pep8-naming", "wheel", "twine"]
 docs = ["sphinx (>=5)", "sphinx-autodoc-typehints", "sphinx-rtd-theme"]
-test = ["coverage", "mock (>=4)", "pytest (>=7)", "pytest-cov", "pytest-mock (>=3)"]
+test = ["pytest (>=7)", "pytest-mock (>=3)", "mock (>=4)", "pytest-cov", "coverage"]
 
 [[package]]
 name = "greenlet"
@@ -600,8 +600,8 @@ optional = false
 python-versions = ">=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*"
 
 [package.extras]
-docs = ["Sphinx", "docutils (<0.18)"]
-test = ["faulthandler", "objgraph", "psutil"]
+docs = ["sphinx", "docutils (<0.18)"]
+test = ["objgraph", "psutil", "faulthandler"]
 
 [[package]]
 name = "hbreader"
@@ -639,9 +639,9 @@ python-versions = ">=3.7"
 zipp = ">=0.5"
 
 [package.extras]
-docs = ["furo", "jaraco.packaging (>=9)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)"]
+docs = ["sphinx (>=3.5)", "jaraco.packaging (>=9)", "rst.linker (>=1.9)", "furo", "jaraco.tidelift (>=1.4)"]
 perf = ["ipython"]
-testing = ["flake8 (<5)", "flufl.flake8", "importlib-resources (>=1.3)", "packaging", "pyfakefs", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=1.3)", "pytest-flake8", "pytest-mypy (>=0.9.1)", "pytest-perf (>=0.9.2)"]
+testing = ["pytest (>=6)", "pytest-checkdocs (>=2.4)", "pytest-flake8", "flake8 (<5)", "pytest-cov", "pytest-enabler (>=1.3)", "packaging", "pyfakefs", "flufl.flake8", "pytest-perf (>=0.9.2)", "pytest-black (>=0.3.7)", "pytest-mypy (>=0.9.1)", "importlib-resources (>=1.3)"]
 
 [[package]]
 name = "inflect"
@@ -655,8 +655,8 @@ python-versions = ">=3.7"
 pydantic = ">=1.9.1"
 
 [package.extras]
-docs = ["furo", "jaraco.packaging (>=9)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)"]
-testing = ["flake8 (<5)", "pygments", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=1.3)", "pytest-flake8", "pytest-mypy (>=0.9.1)"]
+docs = ["sphinx (>=3.5)", "jaraco.packaging (>=9)", "rst.linker (>=1.9)", "furo", "jaraco.tidelift (>=1.4)"]
+testing = ["pytest (>=6)", "pytest-checkdocs (>=2.4)", "pytest-flake8", "flake8 (<5)", "pytest-cov", "pytest-enabler (>=1.3)", "pygments", "pytest-black (>=0.3.7)", "pytest-mypy (>=0.9.1)"]
 
 [[package]]
 name = "iniconfig"
@@ -668,7 +668,7 @@ python-versions = "*"
 
 [[package]]
 name = "ipykernel"
-version = "6.17.0"
+version = "6.17.1"
 description = "IPython Kernel for Jupyter"
 category = "dev"
 optional = false
@@ -689,7 +689,7 @@ traitlets = ">=5.1.0"
 
 [package.extras]
 docs = ["myst-parser", "pydata-sphinx-theme", "sphinx", "sphinxcontrib-github-alt"]
-test = ["flaky", "ipyparallel", "pre-commit", "pytest (>=7.0)", "pytest-cov", "pytest-timeout"]
+test = ["flaky", "ipyparallel", "pre-commit", "pytest-cov", "pytest-timeout", "pytest (>=7.0)"]
 
 [[package]]
 name = "ipython"
@@ -714,9 +714,9 @@ stack-data = "*"
 traitlets = ">=5"
 
 [package.extras]
-all = ["black", "curio", "docrepr", "ipykernel", "ipyparallel", "ipywidgets", "matplotlib", "matplotlib (!=3.2.0)", "nbconvert", "nbformat", "notebook", "numpy (>=1.20)", "pandas", "pytest (<7)", "pytest (<7.1)", "pytest-asyncio", "qtconsole", "setuptools (>=18.5)", "sphinx (>=1.3)", "sphinx-rtd-theme", "stack-data", "testpath", "trio", "typing-extensions"]
+all = ["black", "ipykernel", "setuptools (>=18.5)", "sphinx (>=1.3)", "sphinx-rtd-theme", "docrepr", "matplotlib", "stack-data", "pytest (<7)", "typing-extensions", "pytest (<7.1)", "pytest-asyncio", "testpath", "nbconvert", "nbformat", "ipywidgets", "notebook", "ipyparallel", "qtconsole", "curio", "matplotlib (!=3.2.0)", "numpy (>=1.20)", "pandas", "trio"]
 black = ["black"]
-doc = ["docrepr", "ipykernel", "matplotlib", "pytest (<7)", "pytest (<7.1)", "pytest-asyncio", "setuptools (>=18.5)", "sphinx (>=1.3)", "sphinx-rtd-theme", "stack-data", "testpath", "typing-extensions"]
+doc = ["ipykernel", "setuptools (>=18.5)", "sphinx (>=1.3)", "sphinx-rtd-theme", "docrepr", "matplotlib", "stack-data", "pytest (<7)", "typing-extensions", "pytest (<7.1)", "pytest-asyncio", "testpath"]
 kernel = ["ipykernel"]
 nbconvert = ["nbconvert"]
 nbformat = ["nbformat"]
@@ -724,7 +724,7 @@ notebook = ["ipywidgets", "notebook"]
 parallel = ["ipyparallel"]
 qtconsole = ["qtconsole"]
 test = ["pytest (<7.1)", "pytest-asyncio", "testpath"]
-test-extra = ["curio", "matplotlib (!=3.2.0)", "nbformat", "numpy (>=1.20)", "pandas", "pytest (<7.1)", "pytest-asyncio", "testpath", "trio"]
+test_extra = ["pytest (<7.1)", "pytest-asyncio", "testpath", "curio", "matplotlib (!=3.2.0)", "nbformat", "numpy (>=1.20)", "pandas", "trio"]
 
 [[package]]
 name = "ipython-genutils"
@@ -817,11 +817,14 @@ pyyaml = "*"
 
 [[package]]
 name = "jsonasobj"
-version = "1.3.1"
+version = "2.0.1"
 description = "JSON as python objects"
 category = "main"
 optional = false
-python-versions = "*"
+python-versions = ">=3.6"
+
+[package.dependencies]
+hbreader = "*"
 
 [[package]]
 name = "jsonasobj2"
@@ -908,7 +911,7 @@ qtconsole = "*"
 
 [[package]]
 name = "jupyter-client"
-version = "7.4.4"
+version = "7.4.5"
 description = "Jupyter protocol implementation and client libraries"
 category = "dev"
 optional = false
@@ -924,7 +927,7 @@ tornado = ">=6.2"
 traitlets = "*"
 
 [package.extras]
-doc = ["ipykernel", "myst-parser", "sphinx (>=1.3.6)", "sphinx-rtd-theme", "sphinxcontrib-github-alt"]
+doc = ["ipykernel", "myst-parser", "sphinx-rtd-theme", "sphinx (>=1.3.6)", "sphinxcontrib-github-alt"]
 test = ["codecov", "coverage", "ipykernel (>=6.12)", "ipython", "mypy", "pre-commit", "pytest", "pytest-asyncio (>=0.18)", "pytest-cov", "pytest-timeout"]
 
 [[package]]
@@ -947,13 +950,14 @@ test = ["pexpect"]
 
 [[package]]
 name = "jupyter-core"
-version = "4.11.2"
+version = "5.0.0"
 description = "Jupyter core package. A base package on which Jupyter projects rely."
 category = "dev"
 optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.8"
 
 [package.dependencies]
+platformdirs = "*"
 pywin32 = {version = ">=1.0", markers = "sys_platform == \"win32\" and platform_python_implementation != \"PyPy\""}
 traitlets = "*"
 
@@ -962,7 +966,7 @@ test = ["ipykernel", "pre-commit", "pytest", "pytest-cov", "pytest-timeout"]
 
 [[package]]
 name = "jupyter-server"
-version = "1.23.0"
+version = "1.23.1"
 description = "=?utf-8?q?The_backend=E2=80=94i=2Ee=2E_core_services=2C_APIs=2C_and_REST_endpoints=E2=80=94to_Jupyter_web_applications=2E?="
 category = "dev"
 optional = false
@@ -987,7 +991,7 @@ traitlets = ">=5.1"
 websocket-client = "*"
 
 [package.extras]
-test = ["coverage", "ipykernel", "pre-commit", "pytest (>=7.0)", "pytest-console-scripts", "pytest-cov", "pytest-mock", "pytest-timeout", "pytest-tornasync", "requests"]
+test = ["coverage", "ipykernel", "pre-commit", "pytest-console-scripts", "pytest-cov", "pytest-mock", "pytest-timeout", "pytest-tornasync", "pytest (>=7.0)", "requests"]
 
 [[package]]
 name = "jupyterlab-pygments"
@@ -1040,13 +1044,13 @@ optional = false
 python-versions = "*"
 
 [package.extras]
-atomic-cache = ["atomicwrites"]
+atomic_cache = ["atomicwrites"]
 nearley = ["js2py"]
 regex = ["regex"]
 
 [[package]]
 name = "linkml"
-version = "1.3.12"
+version = "1.3.13"
 description = "Linked Open Data Modeling Language"
 category = "main"
 optional = false
@@ -1131,7 +1135,7 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, != 3.4.*"
 [package.extras]
 cssselect = ["cssselect (>=0.7)"]
 html5 = ["html5lib"]
-htmlsoup = ["BeautifulSoup4"]
+htmlsoup = ["beautifulsoup4"]
 source = ["Cython (>=0.29.7)"]
 
 [[package]]
@@ -1160,14 +1164,14 @@ python-versions = ">=3.7"
 mdurl = ">=0.1,<1.0"
 
 [package.extras]
-benchmarking = ["psutil", "pytest", "pytest-benchmark (>=3.2,<4.0)"]
-code-style = ["pre-commit (==2.6)"]
-compare = ["commonmark (>=0.9.1,<0.10.0)", "markdown (>=3.3.6,<3.4.0)", "mistletoe (>=0.8.1,<0.9.0)", "mistune (>=2.0.2,<2.1.0)", "panflute (>=2.1.3,<2.2.0)"]
-linkify = ["linkify-it-py (>=1.0,<2.0)"]
-plugins = ["mdit-py-plugins"]
+testing = ["pytest-regressions", "pytest-cov", "pytest", "coverage"]
+rtd = ["sphinx-book-theme", "sphinx-design", "sphinx-copybutton", "sphinx", "pyyaml", "myst-parser", "attrs"]
 profiling = ["gprof2dot"]
-rtd = ["attrs", "myst-parser", "pyyaml", "sphinx", "sphinx-copybutton", "sphinx-design", "sphinx_book_theme"]
-testing = ["coverage", "pytest", "pytest-cov", "pytest-regressions"]
+plugins = ["mdit-py-plugins"]
+linkify = ["linkify-it-py (>=1.0,<2.0)"]
+compare = ["panflute (>=2.1.3,<2.2.0)", "mistune (>=2.0.2,<2.1.0)", "mistletoe (>=0.8.1,<0.9.0)", "markdown (>=3.3.6,<3.4.0)", "commonmark (>=0.9.1,<0.10.0)"]
+code_style = ["pre-commit (==2.6)"]
+benchmarking = ["pytest-benchmark (>=3.2,<4.0)", "pytest", "psutil"]
 
 [[package]]
 name = "markupsafe"
@@ -1200,9 +1204,9 @@ python-versions = ">=3.7"
 markdown-it-py = ">=1.0.0,<3.0.0"
 
 [package.extras]
-code-style = ["pre-commit"]
-rtd = ["attrs", "myst-parser (>=0.16.1,<0.17.0)", "sphinx-book-theme (>=0.1.0,<0.2.0)"]
-testing = ["coverage", "pytest", "pytest-cov", "pytest-regressions"]
+testing = ["pytest-regressions", "pytest-cov", "pytest", "coverage"]
+rtd = ["sphinx-book-theme (>=0.1.0,<0.2.0)", "myst-parser (>=0.16.1,<0.17.0)", "attrs"]
+code_style = ["pre-commit"]
 
 [[package]]
 name = "mdurl"
@@ -1251,7 +1255,7 @@ watchdog = ">=2.0"
 
 [package.extras]
 i18n = ["babel (>=2.9.0)"]
-min-versions = ["babel (==2.9.0)", "click (==7.0)", "colorama (==0.4)", "ghp-import (==1.0)", "importlib-metadata (==4.3)", "jinja2 (==2.11.1)", "markdown (==3.2.1)", "markupsafe (==2.0.1)", "mergedeep (==1.3.4)", "packaging (==20.5)", "pyyaml (==5.1)", "pyyaml-env-tag (==0.1)", "typing-extensions (==3.10)", "watchdog (==2.0)"]
+min-versions = ["babel (==2.9.0)", "click (==7.0)", "colorama (==0.4)", "ghp-import (==1.0)", "importlib-metadata (==4.3)", "jinja2 (==2.11.1)", "markdown (==3.2.1)", "markupsafe (==2.0.1)", "mergedeep (==1.3.4)", "packaging (==20.5)", "pyyaml-env-tag (==0.1)", "pyyaml (==5.1)", "typing-extensions (==3.10)", "watchdog (==2.0)"]
 
 [[package]]
 name = "more-click"
@@ -1298,10 +1302,10 @@ sphinx = ">=4,<6"
 typing-extensions = "*"
 
 [package.extras]
-code-style = ["pre-commit (>=2.12,<3.0)"]
+code_style = ["pre-commit (>=2.12,<3.0)"]
 linkify = ["linkify-it-py (>=1.0,<2.0)"]
-rtd = ["ipython", "sphinx-book-theme", "sphinx-design", "sphinxcontrib.mermaid (>=0.7.1,<0.8.0)", "sphinxext-opengraph (>=0.6.3,<0.7.0)", "sphinxext-rediraffe (>=0.2.7,<0.3.0)"]
-testing = ["beautifulsoup4", "coverage[toml]", "pytest (>=6,<7)", "pytest-cov", "pytest-param-files (>=0.3.4,<0.4.0)", "pytest-regressions", "sphinx (<5.2)", "sphinx-pytest"]
+rtd = ["ipython", "sphinx-book-theme", "sphinx-design", "sphinxext-rediraffe (>=0.2.7,<0.3.0)", "sphinxcontrib.mermaid (>=0.7.1,<0.8.0)", "sphinxext-opengraph (>=0.6.3,<0.7.0)"]
+testing = ["beautifulsoup4", "coverage", "pytest (>=6,<7)", "pytest-cov", "pytest-regressions", "pytest-param-files (>=0.3.4,<0.4.0)", "sphinx-pytest", "sphinx (<5.2)"]
 
 [[package]]
 name = "nbclassic"
@@ -1331,9 +1335,9 @@ tornado = ">=6.1"
 traitlets = ">=4.2.1"
 
 [package.extras]
-docs = ["myst-parser", "nbsphinx", "sphinx", "sphinx-rtd-theme", "sphinxcontrib-github-alt"]
+docs = ["sphinx", "nbsphinx", "sphinxcontrib-github-alt", "sphinx-rtd-theme", "myst-parser"]
 json-logging = ["json-logging"]
-test = ["coverage", "nbval", "pytest", "pytest-cov", "pytest-playwright", "pytest-tornasync", "requests", "requests-unixsocket", "testpath"]
+test = ["pytest", "coverage", "requests", "testpath", "nbval", "pytest-playwright", "pytest-cov", "pytest-tornasync", "requests-unixsocket"]
 
 [[package]]
 name = "nbclient"
@@ -1350,12 +1354,12 @@ nest-asyncio = "*"
 traitlets = ">=5.2.2"
 
 [package.extras]
-sphinx = ["Sphinx (>=1.7)", "autodoc-traits", "mock", "moto", "myst-parser", "sphinx-book-theme"]
-test = ["black", "check-manifest", "flake8", "ipykernel", "ipython", "ipywidgets", "mypy", "nbconvert", "pip (>=18.1)", "pre-commit", "pytest (>=4.1)", "pytest-asyncio", "pytest-cov (>=2.6.1)", "setuptools (>=60.0)", "testpath", "twine (>=1.11.0)", "xmltodict"]
+test = ["xmltodict", "twine (>=1.11.0)", "testpath", "setuptools (>=60.0)", "pytest-cov (>=2.6.1)", "pytest-asyncio", "pytest (>=4.1)", "pre-commit", "pip (>=18.1)", "nbconvert", "mypy", "ipywidgets", "ipython", "ipykernel", "flake8", "check-manifest", "black"]
+sphinx = ["sphinx-book-theme", "Sphinx (>=1.7)", "myst-parser", "moto", "mock", "autodoc-traits"]
 
 [[package]]
 name = "nbconvert"
-version = "7.2.3"
+version = "7.2.4"
 description = "Converting Jupyter Notebooks"
 category = "dev"
 optional = false
@@ -1380,8 +1384,8 @@ tinycss2 = "*"
 traitlets = ">=5.0"
 
 [package.extras]
-all = ["ipykernel", "ipython", "ipywidgets (>=7)", "myst-parser", "nbsphinx (>=0.2.12)", "pre-commit", "pyppeteer (>=1,<1.1)", "pyqtwebengine (>=5.15)", "pytest", "pytest-cov", "pytest-dependency", "sphinx (==5.0.2)", "sphinx-rtd-theme", "tornado (>=6.1)"]
-docs = ["ipython", "myst-parser", "nbsphinx (>=0.2.12)", "sphinx (==5.0.2)", "sphinx-rtd-theme"]
+all = ["ipykernel", "ipython", "ipywidgets (>=7)", "myst-parser", "nbsphinx (>=0.2.12)", "pre-commit", "pyppeteer (>=1,<1.1)", "pyqtwebengine (>=5.15)", "pytest", "pytest-cov", "pytest-dependency", "sphinx-rtd-theme", "sphinx (==5.0.2)", "tornado (>=6.1)"]
+docs = ["ipython", "myst-parser", "nbsphinx (>=0.2.12)", "sphinx-rtd-theme", "sphinx (==5.0.2)"]
 qtpdf = ["pyqtwebengine (>=5.15)"]
 qtpng = ["pyqtwebengine (>=5.15)"]
 serve = ["tornado (>=6.1)"]
@@ -1422,11 +1426,11 @@ optional = false
 python-versions = ">=3.8"
 
 [package.extras]
-default = ["matplotlib (>=3.4)", "numpy (>=1.19)", "pandas (>=1.3)", "scipy (>=1.8)"]
-developer = ["mypy (>=0.982)", "pre-commit (>=2.20)"]
-doc = ["nb2plots (>=0.6)", "numpydoc (>=1.5)", "pillow (>=9.2)", "pydata-sphinx-theme (>=0.11)", "sphinx (>=5.2)", "sphinx-gallery (>=0.11)", "texext (>=0.6.6)"]
-extra = ["lxml (>=4.6)", "pydot (>=1.4.2)", "pygraphviz (>=1.9)", "sympy (>=1.10)"]
-test = ["codecov (>=2.1)", "pytest (>=7.2)", "pytest-cov (>=4.0)"]
+default = ["numpy (>=1.19)", "scipy (>=1.8)", "matplotlib (>=3.4)", "pandas (>=1.3)"]
+developer = ["pre-commit (>=2.20)", "mypy (>=0.982)"]
+doc = ["sphinx (>=5.2)", "pydata-sphinx-theme (>=0.11)", "sphinx-gallery (>=0.11)", "numpydoc (>=1.5)", "pillow (>=9.2)", "nb2plots (>=0.6)", "texext (>=0.6.6)"]
+extra = ["lxml (>=4.6)", "pygraphviz (>=1.9)", "pydot (>=1.4.2)", "sympy (>=1.10)"]
+test = ["pytest (>=7.2)", "pytest-cov (>=4.0)", "codecov (>=2.1)"]
 
 [[package]]
 name = "notebook"
@@ -1455,9 +1459,9 @@ tornado = ">=6.1"
 traitlets = ">=4.2.1"
 
 [package.extras]
-docs = ["myst-parser", "nbsphinx", "sphinx", "sphinx-rtd-theme", "sphinxcontrib-github-alt"]
+docs = ["sphinx", "nbsphinx", "sphinxcontrib-github-alt", "sphinx-rtd-theme", "myst-parser"]
 json-logging = ["json-logging"]
-test = ["coverage", "nbval", "pytest", "pytest-cov", "requests", "requests-unixsocket", "selenium (==4.1.5)", "testpath"]
+test = ["pytest", "coverage", "requests", "testpath", "nbval", "selenium (==4.1.5)", "pytest-cov", "requests-unixsocket"]
 
 [[package]]
 name = "notebook-shim"
@@ -1506,8 +1510,8 @@ networkx = ">=2"
 pronto = ">=2.4.0"
 
 [package.extras]
-dev = ["fire", "pandas", "pre-commit", "pytest"]
 viz = ["pygraphviz"]
+dev = ["pytest", "pre-commit", "pandas", "fire"]
 
 [[package]]
 name = "oaklib"
@@ -1561,8 +1565,8 @@ pystow = "*"
 requests = "*"
 
 [package.extras]
-docs = ["sphinx", "sphinx-autodoc-typehints", "sphinx-automodapi", "sphinx-click", "sphinx-rtd-theme"]
 tests = ["coverage", "pytest"]
+docs = ["sphinx-automodapi", "sphinx-autodoc-typehints", "sphinx-click", "sphinx-rtd-theme", "sphinx"]
 
 [[package]]
 name = "ontoportal-client"
@@ -1577,8 +1581,8 @@ pystow = "*"
 typing-extensions = "*"
 
 [package.extras]
-docs = ["sphinx", "sphinx-autodoc-typehints", "sphinx-automodapi", "sphinx-rtd-theme"]
-tests = ["coverage", "pytest", "unittest-templates"]
+tests = ["unittest-templates", "coverage", "pytest"]
+docs = ["sphinx-automodapi", "sphinx-autodoc-typehints", "sphinx-rtd-theme", "sphinx"]
 
 [[package]]
 name = "openpyxl"
@@ -1612,14 +1616,14 @@ python-versions = ">=3.8"
 
 [package.dependencies]
 numpy = [
-    {version = ">=1.20.3", markers = "python_version < \"3.10\""},
     {version = ">=1.21.0", markers = "python_version >= \"3.10\""},
+    {version = ">=1.20.3", markers = "python_version < \"3.10\""},
 ]
 python-dateutil = ">=2.8.1"
 pytz = ">=2020.1"
 
 [package.extras]
-test = ["hypothesis (>=5.5.3)", "pytest (>=6.0)", "pytest-xdist (>=1.31)"]
+test = ["pytest-xdist (>=1.31)", "pytest (>=6.0)", "hypothesis (>=5.5.3)"]
 
 [[package]]
 name = "pandasql"
@@ -1652,14 +1656,14 @@ typing-inspect = ">=0.6.0"
 wrapt = "*"
 
 [package.extras]
-all = ["black", "dask", "fastapi", "frictionless", "geopandas", "hypothesis (>=5.41.1)", "modin", "pandas-stubs (<=1.4.3.220807)", "pyspark (>=3.2.0)", "pyyaml (>=5.1)", "ray (<=1.7.0)", "scipy", "shapely"]
+all = ["frictionless", "dask", "black", "pandas-stubs (<=1.4.3.220807)", "fastapi", "hypothesis (>=5.41.1)", "scipy", "modin", "pyspark (>=3.2.0)", "ray (<=1.7.0)", "shapely", "geopandas", "pyyaml (>=5.1)"]
 dask = ["dask"]
 fastapi = ["fastapi"]
 geopandas = ["geopandas", "shapely"]
 hypotheses = ["scipy"]
-io = ["black", "frictionless", "pyyaml (>=5.1)"]
-modin = ["dask", "modin", "ray (<=1.7.0)"]
-modin-dask = ["dask", "modin"]
+io = ["pyyaml (>=5.1)", "black", "frictionless"]
+modin = ["modin", "ray (<=1.7.0)", "dask"]
+modin-dask = ["modin", "dask"]
 modin-ray = ["modin", "ray (<=1.7.0)"]
 mypy = ["pandas-stubs (<=1.4.3.220807)"]
 pyspark = ["pyspark (>=3.2.0)"]
@@ -1721,8 +1725,8 @@ optional = false
 python-versions = ">=3.7"
 
 [package.extras]
-docs = ["furo (>=2022.9.29)", "proselint (>=0.13)", "sphinx (>=5.3)", "sphinx-autodoc-typehints (>=1.19.4)"]
-test = ["appdirs (==1.4.4)", "pytest (>=7.2)", "pytest-cov (>=4)", "pytest-mock (>=3.10)"]
+docs = ["furo (>=2022.9.29)", "proselint (>=0.13)", "sphinx-autodoc-typehints (>=1.19.4)", "sphinx (>=5.3)"]
+test = ["appdirs (==1.4.4)", "pytest-cov (>=4)", "pytest-mock (>=3.10)", "pytest (>=7.2)"]
 
 [[package]]
 name = "pluggy"
@@ -1733,8 +1737,8 @@ optional = false
 python-versions = ">=3.6"
 
 [package.extras]
-dev = ["pre-commit", "tox"]
-testing = ["pytest", "pytest-benchmark"]
+testing = ["pytest-benchmark", "pytest"]
+dev = ["tox", "pre-commit"]
 
 [[package]]
 name = "ply"
@@ -1808,14 +1812,14 @@ python-dateutil = ">=2.8,<3.0"
 
 [[package]]
 name = "psutil"
-version = "5.9.3"
+version = "5.9.4"
 description = "Cross-platform lib for process and system monitoring in Python."
 category = "dev"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
 
 [package.extras]
-test = ["enum34", "ipaddress", "mock", "pywin32", "wmi"]
+test = ["ipaddress", "mock", "enum34", "pywin32", "wmi"]
 
 [[package]]
 name = "psycopg2-binary"
@@ -1918,7 +1922,7 @@ optional = false
 python-versions = ">=3.6.8"
 
 [package.extras]
-diagrams = ["jinja2", "railroad-diagrams"]
+diagrams = ["railroad-diagrams", "jinja2"]
 
 [[package]]
 name = "pyrsistent"
@@ -1978,7 +1982,7 @@ tqdm = "*"
 
 [package.extras]
 aws = ["boto3"]
-docs = ["sphinx", "sphinx-autodoc-typehints", "sphinx-automodapi", "sphinx-click", "sphinx-rtd-theme"]
+docs = ["sphinx", "sphinx-rtd-theme", "sphinx-click", "sphinx-autodoc-typehints", "sphinx-automodapi"]
 pandas = ["pandas"]
 rdf = ["rdflib"]
 tests = ["coverage", "pytest", "requests-file"]
@@ -2116,7 +2120,7 @@ test = ["flaky", "pytest", "pytest-qt"]
 
 [[package]]
 name = "qtpy"
-version = "2.2.1"
+version = "2.3.0"
 description = "Provides an abstraction layer on top of the various Qt bindings (PyQt5/6 and PySide2/6)."
 category = "dev"
 optional = false
@@ -2159,12 +2163,11 @@ python-versions = ">=3.7"
 [package.dependencies]
 isodate = "*"
 pyparsing = "*"
-setuptools = "*"
 
 [package.extras]
 berkeleydb = ["berkeleydb"]
-dev = ["black (==22.6.0)", "flake8", "flakeheaven", "isort", "mypy", "pep8-naming", "types-setuptools"]
-docs = ["myst-parser", "sphinx (<6)", "sphinx-autodoc-typehints", "sphinxcontrib-apidoc", "sphinxcontrib-kroki"]
+dev = ["black (==22.6.0)", "flake8", "isort", "mypy", "pep8-naming", "types-setuptools", "flakeheaven"]
+docs = ["myst-parser", "sphinx (<6)", "sphinxcontrib-apidoc", "sphinxcontrib-kroki", "sphinx-autodoc-typehints"]
 html = ["html5lib"]
 networkx = ["networkx"]
 tests = ["html5lib", "pytest", "pytest-cov"]
@@ -2208,7 +2211,7 @@ urllib3 = ">=1.21.1,<1.27"
 
 [package.extras]
 socks = ["PySocks (>=1.5.6,!=1.5.7)"]
-use-chardet-on-py3 = ["chardet (>=3.0.2,<6)"]
+use_chardet_on_py3 = ["chardet (>=3.0.2,<6)"]
 
 [[package]]
 name = "rfc3339-validator"
@@ -2230,7 +2233,7 @@ optional = false
 python-versions = "*"
 
 [[package]]
-name = "ruamel-yaml"
+name = "ruamel.yaml"
 version = "0.17.21"
 description = "ruamel.yaml is a YAML parser/emitter that supports roundtrip preservation of comments, seq/map flow style, and map key order"
 category = "main"
@@ -2245,7 +2248,7 @@ docs = ["ryd"]
 jinja2 = ["ruamel.yaml.jinja2 (>=0.2)"]
 
 [[package]]
-name = "ruamel-yaml-clib"
+name = "ruamel.yaml.clib"
 version = "0.2.7"
 description = "C version of reader, parser and emitter for ruamel.yaml derived from libyaml"
 category = "main"
@@ -2264,9 +2267,9 @@ python-versions = ">=3.8"
 numpy = ">=1.18.5,<1.26.0"
 
 [package.extras]
-dev = ["flake8", "mypy", "pycodestyle", "typing_extensions"]
-doc = ["matplotlib (>2)", "numpydoc", "pydata-sphinx-theme (==0.9.0)", "sphinx (!=4.1.0)", "sphinx-panels (>=0.5.2)", "sphinx-tabs"]
-test = ["asv", "gmpy2", "mpmath", "pytest", "pytest-cov", "pytest-xdist", "scikit-umfpack", "threadpoolctl"]
+test = ["pytest", "pytest-cov", "pytest-xdist", "asv", "mpmath", "gmpy2", "threadpoolctl", "scikit-umfpack"]
+doc = ["sphinx (!=4.1.0)", "pydata-sphinx-theme (==0.9.0)", "sphinx-panels (>=0.5.2)", "matplotlib (>2)", "numpydoc", "sphinx-tabs"]
+dev = ["mypy", "typing-extensions", "pycodestyle", "flake8"]
 
 [[package]]
 name = "semsql"
@@ -2290,23 +2293,10 @@ optional = false
 python-versions = "*"
 
 [package.extras]
-nativelib = ["pyobjc-framework-Cocoa", "pywin32"]
-objc = ["pyobjc-framework-Cocoa"]
+nativelib = ["pyobjc-framework-cocoa", "pywin32"]
+objc = ["pyobjc-framework-cocoa"]
 win32 = ["pywin32"]
 
-[[package]]
-name = "setuptools"
-version = "65.5.1"
-description = "Easily download, build, install, upgrade, and uninstall Python packages"
-category = "main"
-optional = false
-python-versions = ">=3.7"
-
-[package.extras]
-docs = ["furo", "jaraco.packaging (>=9)", "jaraco.tidelift (>=1.4)", "pygments-github-lexers (==0.0.5)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-favicon", "sphinx-hoverxref (<2)", "sphinx-inline-tabs", "sphinx-notfound-page (==0.8.3)", "sphinx-reredirects", "sphinxcontrib-towncrier"]
-testing = ["build[virtualenv]", "filelock (>=3.4.0)", "flake8 (<5)", "flake8-2020", "ini2toml[lite] (>=0.9)", "jaraco.envs (>=2.2)", "jaraco.path (>=3.2.0)", "pip (>=19.1)", "pip-run (>=8.8)", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=1.3)", "pytest-flake8", "pytest-mypy (>=0.9.1)", "pytest-perf", "pytest-timeout", "pytest-xdist", "tomli-w (>=1.0.0)", "virtualenv (>=13.0.0)", "wheel"]
-testing-integration = ["build[virtualenv]", "filelock (>=3.4.0)", "jaraco.envs (>=2.2)", "jaraco.path (>=3.2.0)", "pytest", "pytest-enabler", "pytest-xdist", "tomli", "virtualenv (>=13.0.0)", "wheel"]
-
 [[package]]
 name = "shexjsg"
 version = "0.8.2"
@@ -2383,10 +2373,10 @@ python-versions = ">=3.7"
 rdflib = ">=6.1.1"
 
 [package.extras]
-dev = ["mypy (>=0.931)", "pandas (>=1.3.5)", "pandas-stubs (>=1.2.0.48)", "setuptools (>=3.7.1)"]
-docs = ["sphinx (<5)", "sphinx-rtd-theme"]
-keepalive = ["keepalive (>=0.5)"]
 pandas = ["pandas (>=1.3.5)"]
+keepalive = ["keepalive (>=0.5)"]
+docs = ["sphinx-rtd-theme", "sphinx (<5)"]
+dev = ["pandas-stubs (>=1.2.0.48)", "pandas (>=1.3.5)", "mypy (>=0.931)", "setuptools (>=3.7.1)"]
 
 [[package]]
 name = "sphinx"
@@ -2417,8 +2407,8 @@ sphinxcontrib-serializinghtml = ">=1.1.5"
 
 [package.extras]
 docs = ["sphinxcontrib-websupport"]
-lint = ["docutils-stubs", "flake8 (>=3.5.0)", "isort", "mypy (>=0.931)", "types-requests", "types-typed-ast"]
-test = ["cython", "html5lib", "pytest", "pytest-cov", "typed-ast"]
+lint = ["flake8 (>=3.5.0)", "isort", "mypy (>=0.931)", "docutils-stubs", "types-typed-ast", "types-requests"]
+test = ["pytest", "pytest-cov", "html5lib", "cython", "typed-ast"]
 
 [[package]]
 name = "sphinx-click"
@@ -2454,7 +2444,7 @@ docutils = "<0.18"
 sphinx = ">=1.6,<6"
 
 [package.extras]
-dev = ["bump2version", "sphinxcontrib-httpdomain", "transifex-client", "wheel"]
+dev = ["transifex-client", "sphinxcontrib-httpdomain", "bump2version", "wheel"]
 
 [[package]]
 name = "sphinxcontrib-applehelp"
@@ -2465,8 +2455,8 @@ optional = false
 python-versions = ">=3.5"
 
 [package.extras]
-lint = ["docutils-stubs", "flake8", "mypy"]
 test = ["pytest"]
+lint = ["docutils-stubs", "mypy", "flake8"]
 
 [[package]]
 name = "sphinxcontrib-devhelp"
@@ -2477,8 +2467,8 @@ optional = false
 python-versions = ">=3.5"
 
 [package.extras]
-lint = ["docutils-stubs", "flake8", "mypy"]
 test = ["pytest"]
+lint = ["docutils-stubs", "mypy", "flake8"]
 
 [[package]]
 name = "sphinxcontrib-htmlhelp"
@@ -2489,8 +2479,8 @@ optional = false
 python-versions = ">=3.6"
 
 [package.extras]
-lint = ["docutils-stubs", "flake8", "mypy"]
 test = ["html5lib", "pytest"]
+lint = ["docutils-stubs", "mypy", "flake8"]
 
 [[package]]
 name = "sphinxcontrib-jsmath"
@@ -2501,7 +2491,7 @@ optional = false
 python-versions = ">=3.5"
 
 [package.extras]
-test = ["flake8", "mypy", "pytest"]
+test = ["mypy", "flake8", "pytest"]
 
 [[package]]
 name = "sphinxcontrib-mermaid"
@@ -2520,8 +2510,8 @@ optional = false
 python-versions = ">=3.5"
 
 [package.extras]
-lint = ["docutils-stubs", "flake8", "mypy"]
 test = ["pytest"]
+lint = ["docutils-stubs", "mypy", "flake8"]
 
 [[package]]
 name = "sphinxcontrib-serializinghtml"
@@ -2532,7 +2522,7 @@ optional = false
 python-versions = ">=3.5"
 
 [package.extras]
-lint = ["docutils-stubs", "flake8", "mypy"]
+lint = ["flake8", "mypy", "docutils-stubs"]
 test = ["pytest"]
 
 [[package]]
@@ -2547,25 +2537,25 @@ python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*,>=2.7"
 greenlet = {version = "!=0.4.17", markers = "python_version >= \"3\" and (platform_machine == \"aarch64\" or platform_machine == \"ppc64le\" or platform_machine == \"x86_64\" or platform_machine == \"amd64\" or platform_machine == \"AMD64\" or platform_machine == \"win32\" or platform_machine == \"WIN32\")"}
 
 [package.extras]
-aiomysql = ["aiomysql", "greenlet (!=0.4.17)"]
-aiosqlite = ["aiosqlite", "greenlet (!=0.4.17)", "typing_extensions (!=3.10.0.1)"]
+aiomysql = ["greenlet (!=0.4.17)", "aiomysql"]
+aiosqlite = ["typing_extensions (!=3.10.0.1)", "greenlet (!=0.4.17)", "aiosqlite"]
 asyncio = ["greenlet (!=0.4.17)"]
-asyncmy = ["asyncmy (>=0.2.3,!=0.2.4)", "greenlet (!=0.4.17)"]
-mariadb-connector = ["mariadb (>=1.0.1,!=1.1.2)"]
+asyncmy = ["greenlet (!=0.4.17)", "asyncmy (>=0.2.3,!=0.2.4)"]
+mariadb_connector = ["mariadb (>=1.0.1,!=1.1.2)"]
 mssql = ["pyodbc"]
-mssql-pymssql = ["pymssql"]
-mssql-pyodbc = ["pyodbc"]
-mypy = ["mypy (>=0.910)", "sqlalchemy2-stubs"]
-mysql = ["mysqlclient (>=1.4.0)", "mysqlclient (>=1.4.0,<2)"]
-mysql-connector = ["mysql-connector-python"]
-oracle = ["cx_oracle (>=7)", "cx_oracle (>=7,<8)"]
+mssql_pymssql = ["pymssql"]
+mssql_pyodbc = ["pyodbc"]
+mypy = ["sqlalchemy2-stubs", "mypy (>=0.910)"]
+mysql = ["mysqlclient (>=1.4.0,<2)", "mysqlclient (>=1.4.0)"]
+mysql_connector = ["mysql-connector-python"]
+oracle = ["cx_oracle (>=7,<8)", "cx_oracle (>=7)"]
 postgresql = ["psycopg2 (>=2.7)"]
-postgresql-asyncpg = ["asyncpg", "greenlet (!=0.4.17)"]
-postgresql-pg8000 = ["pg8000 (>=1.16.6,!=1.29.0)"]
-postgresql-psycopg2binary = ["psycopg2-binary"]
-postgresql-psycopg2cffi = ["psycopg2cffi"]
-pymysql = ["pymysql", "pymysql (<1)"]
-sqlcipher = ["sqlcipher3_binary"]
+postgresql_asyncpg = ["greenlet (!=0.4.17)", "asyncpg"]
+postgresql_pg8000 = ["pg8000 (>=1.16.6,!=1.29.0)"]
+postgresql_psycopg2binary = ["psycopg2-binary"]
+postgresql_psycopg2cffi = ["psycopg2cffi"]
+pymysql = ["pymysql (<1)", "pymysql"]
+sqlcipher = ["sqlcipher3-binary"]
 
 [[package]]
 name = "sqlalchemy-utils"
@@ -2587,8 +2577,8 @@ intervals = ["intervals (>=0.7.1)"]
 password = ["passlib (>=1.6,<2.0)"]
 pendulum = ["pendulum (>=2.0.5)"]
 phone = ["phonenumbers (>=5.9.2)"]
-test = ["Jinja2 (>=2.3)", "Pygments (>=1.2)", "backports.zoneinfo", "docutils (>=0.10)", "flake8 (>=2.4.0)", "flexmock (>=0.9.7)", "isort (>=4.2.2)", "pg8000 (>=1.12.4)", "psycopg2 (>=2.5.1)", "psycopg2cffi (>=2.8.1)", "pymysql", "pyodbc", "pytest (>=2.7.1)", "python-dateutil (>=2.6)", "pytz (>=2014.2)"]
-test-all = ["Babel (>=1.3)", "Jinja2 (>=2.3)", "Pygments (>=1.2)", "arrow (>=0.3.4)", "backports.zoneinfo", "colour (>=0.0.4)", "cryptography (>=0.6)", "docutils (>=0.10)", "flake8 (>=2.4.0)", "flexmock (>=0.9.7)", "furl (>=0.4.1)", "intervals (>=0.7.1)", "isort (>=4.2.2)", "passlib (>=1.6,<2.0)", "pendulum (>=2.0.5)", "pg8000 (>=1.12.4)", "phonenumbers (>=5.9.2)", "psycopg2 (>=2.5.1)", "psycopg2cffi (>=2.8.1)", "pymysql", "pyodbc", "pytest (>=2.7.1)", "python-dateutil", "python-dateutil (>=2.6)", "pytz (>=2014.2)"]
+test = ["pytest (>=2.7.1)", "Pygments (>=1.2)", "Jinja2 (>=2.3)", "docutils (>=0.10)", "flexmock (>=0.9.7)", "psycopg2 (>=2.5.1)", "psycopg2cffi (>=2.8.1)", "pg8000 (>=1.12.4)", "pytz (>=2014.2)", "python-dateutil (>=2.6)", "pymysql", "flake8 (>=2.4.0)", "isort (>=4.2.2)", "pyodbc", "backports.zoneinfo"]
+test_all = ["Babel (>=1.3)", "Jinja2 (>=2.3)", "Pygments (>=1.2)", "arrow (>=0.3.4)", "colour (>=0.0.4)", "cryptography (>=0.6)", "docutils (>=0.10)", "flake8 (>=2.4.0)", "flexmock (>=0.9.7)", "furl (>=0.4.1)", "intervals (>=0.7.1)", "isort (>=4.2.2)", "passlib (>=1.6,<2.0)", "pendulum (>=2.0.5)", "pg8000 (>=1.12.4)", "phonenumbers (>=5.9.2)", "psycopg2 (>=2.5.1)", "psycopg2cffi (>=2.8.1)", "pymysql", "pyodbc", "pytest (>=2.7.1)", "python-dateutil", "python-dateutil (>=2.6)", "pytz (>=2014.2)", "backports.zoneinfo"]
 timezone = ["python-dateutil"]
 url = ["furl (>=0.4.1)"]
 
@@ -2613,13 +2603,15 @@ pyparsing = "*"
 pyyaml = "*"
 rdflib = ">=6"
 scipy = "*"
-setuptools = "*"
 sparqlwrapper = "*"
 sssom-schema = "*"
-validators = ">=0.0"
+validators = [
+    "*",
+    ">=0.0",
+]
 
 [package.extras]
-docs = ["recommonmark", "sphinx", "sphinx-autodoc-typehints", "sphinx-click", "sphinx-rtd-theme"]
+docs = ["sphinx", "sphinx-rtd-theme", "sphinx-autodoc-typehints", "sphinx-click", "recommonmark"]
 test = ["pytest"]
 
 [[package]]
@@ -2647,7 +2639,7 @@ executing = ">=1.2.0"
 pure-eval = "*"
 
 [package.extras]
-tests = ["cython", "littleutils", "pygments", "pytest", "typeguard"]
+tests = ["pytest", "typeguard", "pygments", "littleutils", "cython"]
 
 [[package]]
 name = "strsimpy"
@@ -2672,7 +2664,7 @@ tornado = ">=6.1.0"
 
 [package.extras]
 docs = ["pydata-sphinx-theme", "sphinx"]
-test = ["pre-commit", "pytest (>=7.0)", "pytest-timeout"]
+test = ["pre-commit", "pytest-timeout", "pytest (>=7.0)"]
 
 [[package]]
 name = "tinycss2"
@@ -2686,8 +2678,8 @@ python-versions = ">=3.7"
 webencodings = ">=0.4"
 
 [package.extras]
-doc = ["sphinx", "sphinx_rtd_theme"]
 test = ["flake8", "isort", "pytest"]
+doc = ["sphinx-rtd-theme", "sphinx"]
 
 [[package]]
 name = "tomli"
@@ -2733,7 +2725,7 @@ virtualenv = ">=16.0.0,<20.0.0 || >20.0.0,<20.0.1 || >20.0.1,<20.0.2 || >20.0.2,
 
 [package.extras]
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+testing = ["flaky (>=3.4.0)", "freezegun (>=0.3.11)", "pytest (>=4.0.0)", "pytest-cov (>=2.5.1)", "pytest-mock (>=1.10.0)", "pytest-randomly (>=1.0.0)", "psutil (>=5.6.1)", "pathlib2 (>=2.3.3)"]
 
 [[package]]
 name = "tqdm"
@@ -2793,7 +2785,7 @@ optional = false
 python-versions = ">=3.6"
 
 [package.extras]
-dev = ["flake8 (<4.0.0)", "flake8-annotations", "flake8-bugbear", "flake8-commas", "flake8-comprehensions", "flake8-continuation", "flake8-datetimez", "flake8-docstrings", "flake8-import-order", "flake8-literal", "flake8-noqa", "flake8-requirements", "flake8-type-annotations", "flake8-use-fstring", "mypy", "pep8-naming"]
+dev = ["mypy", "flake8 (<4.0.0)", "flake8-annotations", "flake8-bugbear", "flake8-commas", "flake8-comprehensions", "flake8-continuation", "flake8-datetimez", "flake8-docstrings", "flake8-import-order", "flake8-literal", "flake8-noqa", "flake8-requirements", "flake8-type-annotations", "flake8-use-fstring", "pep8-naming"]
 
 [[package]]
 name = "urllib3"
@@ -2804,8 +2796,8 @@ optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*, <4"
 
 [package.extras]
-brotli = ["brotli (>=1.0.9)", "brotlicffi (>=0.8.0)", "brotlipy (>=0.6.0)"]
-secure = ["certifi", "cryptography (>=1.3.4)", "idna (>=2.0.0)", "ipaddress", "pyOpenSSL (>=0.14)", "urllib3-secure-extra"]
+brotli = ["brotlicffi (>=0.8.0)", "brotli (>=1.0.9)", "brotlipy (>=0.6.0)"]
+secure = ["pyOpenSSL (>=0.14)", "cryptography (>=1.3.4)", "idna (>=2.0.0)", "certifi", "urllib3-secure-extra", "ipaddress"]
 socks = ["PySocks (>=1.5.6,!=1.5.7,<2.0)"]
 
 [[package]]
@@ -2820,7 +2812,7 @@ python-versions = ">=3.4"
 decorator = ">=3.4.0"
 
 [package.extras]
-test = ["flake8 (>=2.4.0)", "isort (>=4.2.2)", "pytest (>=2.2.3)"]
+test = ["pytest (>=2.2.3)", "flake8 (>=2.4.0)", "isort (>=4.2.2)"]
 
 [[package]]
 name = "virtualenv"
@@ -2924,8 +2916,8 @@ optional = false
 python-versions = ">=3.7"
 
 [package.extras]
-docs = ["furo", "jaraco.packaging (>=9)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)"]
-testing = ["flake8 (<5)", "func-timeout", "jaraco.functools", "jaraco.itertools", "more-itertools", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=1.3)", "pytest-flake8", "pytest-mypy (>=0.9.1)"]
+docs = ["sphinx (>=3.5)", "jaraco.packaging (>=9)", "rst.linker (>=1.9)", "furo", "jaraco.tidelift (>=1.4)"]
+testing = ["pytest (>=6)", "pytest-checkdocs (>=2.4)", "pytest-flake8", "flake8 (<5)", "pytest-cov", "pytest-enabler (>=1.3)", "jaraco.itertools", "func-timeout", "jaraco.functools", "more-itertools", "pytest-black (>=0.3.7)", "pytest-mypy (>=0.9.1)"]
 
 [extras]
 docs = []
@@ -2934,1941 +2926,225 @@ mariadb = []
 [metadata]
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 python-versions = "^3.9"
-content-hash = "d6477184cf64bdca2c5263a49054b41b228236a30403cb570acd873268b1d294"
+content-hash = "0ccf9b90a2063125515a2400b79f34541f5dd6fa09a5ed9d4b5d50150b8a2b49"
 
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-zipp = [
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-]
+aiohttp = []
+aiosignal = []
+alabaster = []
+antlr4-python3-runtime = []
+anyio = []
+appdirs = []
+appnope = []
+argon2-cffi = []
+argon2-cffi-bindings = []
+arrow = []
+asttokens = []
+async-timeout = []
+attrs = []
+babel = []
+backcall = []
+bcp47 = []
+beautifulsoup4 = []
+bioregistry = []
+bleach = []
+certifi = []
+cffi = []
+cfgraph = []
+chardet = []
+charset-normalizer = []
+class-resolver = []
+click = []
+click-log = []
+colorama = []
+curies = []
+debugpy = []
+decorator = []
+defusedxml = []
+deprecated = []
+deprecation = []
+distlib = []
+docopt = []
+docutils = []
+entrypoints = []
+et-xmlfile = []
+exceptiongroup = []
+executing = []
+fastjsonschema = []
+fastobo = []
+filelock = []
+fqdn = []
+frozenlist = []
+fsspec = []
+funowl = []
+ghp-import = []
+graphviz = []
+greenlet = []
+hbreader = []
+idna = []
+imagesize = []
+importlib-metadata = []
+inflect = []
+iniconfig = []
+ipykernel = []
+ipython = []
+ipython-genutils = []
+ipywidgets = []
+isodate = []
+isoduration = []
+jedi = []
+jinja2 = []
+json-flattener = []
+jsonasobj = []
+jsonasobj2 = []
+jsonpatch = []
+jsonpath-ng = []
+jsonpointer = []
+jsonschema = []
+jupyter = []
+jupyter-client = []
+jupyter-console = []
+jupyter-core = []
+jupyter-server = []
+jupyterlab-pygments = []
+jupyterlab-widgets = []
+kgcl-rdflib = []
+kgcl-schema = []
+lark = []
+linkml = []
+linkml-dataops = []
+linkml-runtime = []
+lxml = []
+markdown = []
+markdown-it-py = []
+markupsafe = []
+matplotlib-inline = []
+mdit-py-plugins = []
+mdurl = []
+mergedeep = []
+mistune = []
+mkdocs = []
+more-click = []
+multidict = []
+mypy-extensions = []
+myst-parser = []
+nbclassic = []
+nbclient = []
+nbconvert = []
+nbformat = []
+nest-asyncio = []
+networkx = []
+notebook = []
+notebook-shim = []
+num2words = []
+numpy = []
+nxontology = []
+oaklib = []
+ols-client = []
+ontoportal-client = []
+openpyxl = []
+packaging = []
+pandas = []
+pandasql = []
+pandera = []
+pandocfilters = []
+parse = []
+parso = []
+pexpect = []
+pickleshare = []
+platformdirs = []
+pluggy = []
+ply = []
+prefixcommons = []
+prefixmaps = []
+prometheus-client = []
+prompt-toolkit = []
+pronto = []
+psutil = []
+psycopg2-binary = []
+ptyprocess = []
+pure-eval = []
+py = []
+pyarrow = []
+pycparser = []
+pydantic = []
+pygments = []
+pyjsg = []
+pyparsing = []
+pyrsistent = []
+pyshex = []
+pyshexc = []
+pystow = []
+pytest = []
+pytest-logging = []
+python-dateutil = []
+pytrie = []
+pytz = []
+pywin32 = []
+pywinpty = []
+pyyaml = []
+pyyaml-env-tag = []
+pyzmq = []
+qtconsole = []
+qtpy = []
+quantulum3 = []
+ratelimit = []
+rdflib = []
+rdflib-jsonld = []
+rdflib-shim = []
+requests = []
+rfc3339-validator = []
+rfc3987 = []
+"ruamel.yaml" = []
+"ruamel.yaml.clib" = []
+scipy = []
+semsql = []
+send2trash = []
+shexjsg = []
+six = []
+sniffio = []
+snowballstemmer = []
+sortedcontainers = []
+soupsieve = []
+sparqlslurper = []
+sparqlwrapper = []
+sphinx = []
+sphinx-click = []
+sphinx-pdj-theme = []
+sphinx-rtd-theme = []
+sphinxcontrib-applehelp = []
+sphinxcontrib-devhelp = []
+sphinxcontrib-htmlhelp = []
+sphinxcontrib-jsmath = []
+sphinxcontrib-mermaid = []
+sphinxcontrib-qthelp = []
+sphinxcontrib-serializinghtml = []
+sqlalchemy = []
+sqlalchemy-utils = []
+sssom = []
+sssom-schema = []
+stack-data = []
+strsimpy = []
+terminado = []
+tinycss2 = []
+tomli = []
+tomlkit = []
+tornado = []
+tox = []
+tqdm = []
+traitlets = []
+typing-extensions = []
+typing-inspect = []
+uri-template = []
+urllib3 = []
+validators = []
+virtualenv = []
+watchdog = []
+wcwidth = []
+webcolors = []
+webencodings = []
+websocket-client = []
+widgetsnbextension = []
+wrapt = []
+yarl = []
+zipp = []
diff --git a/pyproject.toml b/pyproject.toml
index 0d86766..8df806c 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -24,7 +24,7 @@ psycopg2-binary = "^2.9.2"
 strsimpy = "^0.2.1"
 requests = "^2.26.0"
 bioregistry = "^0.5.87"
-oaklib = "^0.1.43"
+oaklib = "^0.1.52"
 pandera = "^0.12.0"
 tomlkit = "^0.11.4"
 inflect = "^6.0.0"
diff --git a/schema_automator/annotators/schema_annotator.py b/schema_automator/annotators/schema_annotator.py
index 3689ce8..cc68c13 100644
--- a/schema_automator/annotators/schema_annotator.py
+++ b/schema_automator/annotators/schema_annotator.py
@@ -55,6 +55,7 @@ def annotate_element(self, elt: Union[PermissibleValue, Element]) -> None:
         if self.mine_descriptions and elt.description:
             texts.append(elt.description)
         for text in texts:
+            logging.info(f"Annotating: {text}")
             for r in self.annotate_text(text):
                 logging.debug(f'MATCH: {r}')
                 if self.allow_partial or r.matches_whole_text:
@@ -91,6 +92,7 @@ def annotate_text(self, text: str) -> Iterator[TextAnnotation]:
         oi = self.ontology_implementation
         text_exp = uncamel(text)  # TODO: use main linkml_runtime method
         if isinstance(oi, TextAnnotatorInterface):
+            logging.debug(f"Using TextAnnotatorInterface on {text_exp}")
             # TextAnnotation is available; use this by default
             for r in oi.annotate_text(text_exp):
                 yield r
@@ -98,6 +100,7 @@ def annotate_text(self, text: str) -> Iterator[TextAnnotation]:
                 for r in oi.annotate_text(text_exp):
                     yield r
         elif isinstance(oi, SearchInterface):
+            logging.debug(f"Using SearchInterface on {text_exp}")
             # use search as an alternative
             cfg = SearchConfiguration(is_complete=True)
             for r in oi.basic_search(text, config=cfg):
@@ -128,7 +131,15 @@ def enrich(self, schema: Union[SchemaDefinition, str]) -> SchemaDefinition:
         Enrich a schema by performing lookups on the external ontology/vocabulary endpoint,
         and copying over metadata
 
-        Currently the only metadata obtained is text definitions
+        Currently, the only metadata obtained is text definitions
+
+        .. code-block:: python
+
+        >>> from schema_automator.annotators.schema_annotator import SchemaAnnotator
+        >>> from oaklib.selector import get_implementation_from_shorthand
+        >>> oi = get_implementation_from_shorthand("sqlite:obo:so")
+        >>> sa = SchemaAnnotator(ontology_implementation=oi)
+        >>> schema = sa.enrich("tests/data/schema.yaml")
 
         :param schema:
         :return:
@@ -160,7 +171,7 @@ def _add_description_from_curies(self, elt: Union[Element, PermissibleValue], cu
             if elt.description:
                 break
             try:
-                defn = oi.get_definition_by_curie(x)
+                defn = oi.definition(x)
                 if defn:
                     elt.description = defn
                 else:
diff --git a/schema_automator/cli.py b/schema_automator/cli.py
index 7d738e6..427a917 100644
--- a/schema_automator/cli.py
+++ b/schema_automator/cli.py
@@ -87,6 +87,13 @@ def main(verbose: int, quiet: bool):
 @click.option('--column-separator', '-s', default='\t', help='separator')
 @click.option('--downcase-header/--no-downcase-header', default=False, help='if true make headers lowercase')
 @click.option('--enum-columns', '-E', multiple=True, help='column that is forced to be an enum')
+@click.option('--enum-threshold', type=click.FLOAT, help='set high to be more inclusive')
+@click.option('--max-enum-size',
+              type=click.INT,
+              help='set high to be more inclusive')
+@click.option('--data-dictionary-row-count',
+              type=click.INT,
+              help='rows that provide metadata about columns')
 @click.option('--robot/--no-robot', default=False, help='set if the TSV is a ROBOT template')
 @click.option('--pandera/--no-pandera', default=False, help='set to use panderas as inference engine')
 def generalize_tsv(tsvfile, output, class_name, schema_name, pandera: bool, annotator, **kwargs):
@@ -99,6 +106,7 @@ def generalize_tsv(tsvfile, output, class_name, schema_name, pandera: bool, anno
 
         schemauto generalize-tsv --class-name Person --schema-name PersonInfo my/data/persons.tsv
     """
+    kwargs = {k:v for k, v in kwargs.items() if v is not None}
     if pandera:
         ie = PandasDataGeneralizer(**kwargs)
     else:
@@ -387,16 +395,32 @@ def annotate_schema(schema: str, input: str, output: str, **kwargs):
 @main.command()
 @click.argument('schema')
 @click.option('--input', '-i', help="OAK input ontology selector")
+@click.option('--annotate/--no-annotate', default=True, help="If true, annotate the schema")
 @output_option
-def enrich_schema(schema: str, input: str, output: str, **args):
+def enrich_schema(schema: str, input: str, output: str, annotate: bool, **args):
     """
-    Annotate all elements of a schema
+    Enrich a schema using an ontology.
+
+    This will use OAK to add additional metadata using uris and mappings in the schema.
+
+    For example, if your schema has a class with a mapping to a SO class,
+    then the definition of that will be copied to the class description.
+    
+    Example:
+
+        schemauto enrich-schema -i bioportal: my-schema.yaml -o my-enriched.yaml
+
+    If your schema has no mappings you can use --annotate to add them
+
+    Example:
 
-    Requires Bioportal API key
+        schemauto enrich-schema -i so.obo --annotate my-schema.yaml -o my-enriched.yaml --annotate
     """
     impl = get_implementation_from_shorthand(input)
     annr = SchemaAnnotator(impl)
     logging.info(f"Enriching: {schema}")
+    if annotate:
+        schema = annr.annotate_schema(schema)
     schema = annr.enrich(schema)
     write_schema(schema, output)
 
diff --git a/schema_automator/generalizers/csv_data_generalizer.py b/schema_automator/generalizers/csv_data_generalizer.py
index 16e1203..b5e5376 100644
--- a/schema_automator/generalizers/csv_data_generalizer.py
+++ b/schema_automator/generalizers/csv_data_generalizer.py
@@ -1,7 +1,7 @@
 import click
 import logging
 import yaml
-from typing import Dict, List, Optional
+from typing import Dict, List, Optional, Set, Any
 from collections import defaultdict
 import os
 import re
@@ -14,6 +14,7 @@
 from deprecation import deprecated
 from linkml_runtime import SchemaView
 from linkml_runtime.linkml_model import SchemaDefinition, ClassDefinition, TypeDefinition, SlotDefinition
+from linkml_runtime.linkml_model.meta import UniqueKey
 from quantulum3 import parser as q_parser
 from dataclasses import dataclass, field
 
@@ -63,17 +64,46 @@ class CsvDataGeneralizer(Generalizer):
     """
 
     column_separator: str = "\t"
+    """character that separates columns in the input file"""
+
     schema_name: str = 'example'
+    """LinkML schema name (no spaces)"""
+
     robot: bool = False
+    """If true, conforms to robot template format. Data dictionary rows start with '>'"""
+
+    data_dictionary_row_count: int = field(default=0)
+    """number of rows after header containing data dictionary information"""
+
     enum_columns: List[str] = field(default_factory=lambda: [])
+    """List of columns that are coerced into enums"""
+
     enum_mask_columns: List[str] = field(default_factory=lambda: [])
+    """List of columns that are excluded from being enums"""
+
     enum_threshold: float = 0.1
+    """If number if distinct values divided by total number of values is greater than this, then the column is considered an enum"""
+
     enum_strlen_threshold: int = 30
+    """Maximimum length of a string to be considered a permissible enum value"""
+
     max_enum_size: int = 50
+    """Max number of permissible values for a column to be considered an enum"""
+
     downcase_header: bool = False
+    """If true, coerce column names to be lower case"""
+
     infer_foreign_keys: bool = False
-    max_pk_len: int = 60   # URIs can be long..
+    """For multi-CVS files, infer linkages between rows"""
+
+    max_pk_len: int = 60
+    """Maximum length to be considered for a primary key column. Note: URIs can be long"""
+
     min_distinct_fk_val: int = 8
+    """For inferring foreign keys, there must be a minimum number."""
+
+    source_schema: Optional[SchemaDefinition] = None
+    """Optional base schema to draw from"""
 
     def infer_linkages(self, files: List[str], **kwargs) -> List[ForeignKey]:
         """
@@ -297,14 +327,31 @@ def convert_dicts(self,
                       rr: List[Dict],
                       schema_name: str = 'example',
                       class_name: str = DEFAULT_CLASS_NAME,
-                      **kwargs) -> SchemaDefinition:
+                      **kwargs) -> Optional[SchemaDefinition]:
+        """
+        Converts a list of row objects to a schema.
+
+        Each row is a data item, presumed to be of the same type,
+        that is generalized.
+
+        :param rr:
+        :param schema_name:
+        :param class_name:
+        :param kwargs:
+        :return:
+        """
         slots = {}
-        slot_values = {}
+
+        slot_distinct_values: Dict[str, Set[Any]] = {}
+        """distinct values for each slot"""
+
+        slot_values: Dict[str, List[Any]] = defaultdict(list)
+        """all values for each slot"""
+
         n = 0
         enums = {}
         robot_defs = {}
         slot_usage = {}
-        types = {}
         enum_columns = self.enum_columns
         enum_mask_columns = self.enum_mask_columns
         if len(rr) == 0:
@@ -317,6 +364,14 @@ def convert_dicts(self,
                 for k, v in row.items():
                     robot_defs[k] = v
                 continue
+            if n <= self.data_dictionary_row_count:
+                if self.source_schema is None:
+                    self.source_schema = SchemaDefinition(id="auto", name="auto")
+                for k, v in row.items():
+                    if k not in self.source_schema.slots:
+                        self.source_schema.slots[k] = SlotDefinition(k)
+                    self.source_schema.slots[k].description = v
+                continue
             for k, v in row.items():
                 if k is None or k == '':
                     continue
@@ -332,22 +387,44 @@ def convert_dicts(self,
                     vs = [v]
                 if k not in slots:
                     slots[k] = {'range': None}
-                    slot_values[k] = set()
+                    slot_distinct_values[k] = set()
                 if v is not None and v != "" and not str(v).startswith('$ref:'):
                     slots[k]['examples'] = [{'value': v}]
-                    slot_values[k].update(vs)
+                    slot_distinct_values[k].update(vs)
+                    slot_values[k] += vs
                 if len(vs) > 1:
                     slots[k]['multivalued'] = True
         types = {}
         new_slots = {}
+        col_number = 0
+        unique_keys = []
         for sn, s in slots.items():
-            vals = slot_values[sn]
+            col_number += 1
+            is_unique = len(set(slot_values[sn])) == len(slot_values[sn])
+            is_pk = is_unique and col_number == 1
+            if self.source_schema and sn in self.source_schema.slots and self.source_schema.slots[sn].identifier:
+                is_pk = True
+            if is_pk:
+                s['identifier'] = True
+            elif is_unique:
+                unique_keys.append(sn)
+            vals = slot_distinct_values[sn]
+            if self.source_schema:
+                if sn in self.source_schema.slots:
+                    s['description'] = self.source_schema.slots[sn].description
             s['range'] = infer_range(s, vals, types)
+            logging.info(f"Slot {sn} has range {s['range']}")
             if (s['range'] == 'string' or sn in enum_columns) and sn not in enum_mask_columns:
+                filtered_vals = \
+                    [v
+                     for v in slot_values[sn]
+                     if not isinteger(v) and not isfloat(v) and not isboolean(v) and not is_date(v)]
+                n_filtered_vals = len(filtered_vals) + 1
                 n_distinct = len(vals)
                 longest = max([len(str(v)) for v in vals]) if n_distinct > 0 else 0
+                logging.info(f"Considering {sn} as enum: {n_distinct} distinct values / {n_filtered_vals}, longest={longest}")
                 if sn in enum_columns or \
-                        ((n_distinct / n) < self.enum_threshold and 0 < n_distinct <= self.max_enum_size
+                        ((n_distinct / n_filtered_vals) < self.enum_threshold and 0 < n_distinct <= self.max_enum_size
                          and longest < self.enum_strlen_threshold):
                     enum_name = sn.replace(' ', '_').replace('(s)', '')
                     enum_name = f'{enum_name}_enum'
@@ -416,6 +493,9 @@ def convert_dicts(self,
         for sn, s in new_slots.items():
             if sn not in slots:
                 slots[sn] = s
+
+        unique_keys = [UniqueKey(f"{k}_key",
+                                 unique_key_slots=[k]) for k in unique_keys]
         schema = SchemaDefinition(
             id=f'https://w3id.org/{schema_name}',
             name=schema_name,
@@ -426,7 +506,9 @@ def convert_dicts(self,
             classes=[
                 ClassDefinition(class_name,
                                 slots=class_slots,
-                                slot_usage=slot_usage)
+                                slot_usage=slot_usage,
+                                unique_keys=unique_keys,
+                                )
             ],
             slots=slots,
             enums=enums
@@ -465,6 +547,16 @@ def isfloat(value):
     except ValueError:
         return False
 
+def isinteger(value):
+    try:
+        int(value)
+        return True
+    except ValueError:
+        return False
+
+def isboolean(value):
+    return value in ['true', 'false']
+
 
 def is_measurement(value):
     ms = q_parser.parse(value)
@@ -503,8 +595,18 @@ def is_all_measurement(values):
         return False
 
 
-def infer_range(slot: dict, vals: set, types: dict) -> str:
+def infer_range(slot: dict, vals: set, types: dict, coerce=True) -> str:
+    """
+    Infers the range of a slot based on the values
+
+    :param slot:
+    :param vals:
+    :param types:
+    :return:
+    """
+    logging.info(f"Inferring value for {list(vals)[0:5]}...")
     nn_vals = [v for v in vals if v is not None and v != ""]
+    logging.info(f"FILTERED: {list(nn_vals)[0:5]}...")
     if len(nn_vals) == 0:
         return 'string'
     if all(str(v).startswith('$ref:') for v in nn_vals):
@@ -513,12 +615,15 @@ def infer_range(slot: dict, vals: set, types: dict) -> str:
         return 'integer'
     if all(isinstance(v, float) for v in nn_vals):
         return 'float'
-    if all(str(v).isdigit() for v in nn_vals):
-        return 'integer'
-    if all(is_date(v) for v in nn_vals):
-        return 'datetime'
-    if all(isfloat(v) for v in nn_vals):
-        return 'float'
+    if coerce:
+        if all(isinteger(v) for v in nn_vals):
+            return 'integer'
+        if all(isboolean(v) for v in nn_vals):
+            return 'boolean'
+        if all(isfloat(v) for v in nn_vals):
+            return 'float'
+        if all(is_date(v) for v in nn_vals):
+            return 'datetime'
     if is_all_measurement(nn_vals):
         return 'measurement'
     v0 = nn_vals[0]
@@ -535,12 +640,17 @@ def infer_range(slot: dict, vals: set, types: dict) -> str:
     return 'string'
 
 
-def get_db(db_id: str) -> str:
-    parts = db_id.split(':')
-    if len(parts) > 1:
-        return parts[0]
-    else:
-        return None
+def get_db(db_id: str) -> Optional[str]:
+    """
+    Extracts the database from a CURIE
+
+    :param db_id:
+    :return:
+    """
+    if isinstance(db_id, str) and ':' in db_id:
+        parts = db_id.split(':')
+        if len(parts) > 1:
+            return parts[0]
 
 
 def is_date(string, fuzzy=False):
diff --git a/tests/resources/bio.obo b/tests/resources/bio.obo
new file mode 100644
index 0000000..e08ff10
--- /dev/null
+++ b/tests/resources/bio.obo
@@ -0,0 +1,13 @@
+format-version: 1.2
+ontology: bio
+
+[Term]
+id: BIO:1
+name: biochemical reaction
+def: "A biochemical reaction" []
+
+[Term]
+id: BIO:2
+name: chemical structure
+def: "A chemical structure" []
+
diff --git a/tests/test_generalizers/test_csv_data_generalizer.py b/tests/test_generalizers/test_csv_data_generalizer.py
index c8244df..d7f83b6 100644
--- a/tests/test_generalizers/test_csv_data_generalizer.py
+++ b/tests/test_generalizers/test_csv_data_generalizer.py
@@ -7,7 +7,7 @@
 import yaml
 from linkml_runtime.linkml_model import SchemaDefinition
 
-from schema_automator.generalizers.csv_data_generalizer import CsvDataGeneralizer
+from schema_automator.generalizers.csv_data_generalizer import CsvDataGeneralizer, infer_range
 from linkml.generators.yamlgen import YAMLGenerator
 
 from schema_automator.utils.schemautils import write_schema
@@ -43,7 +43,7 @@ def test_tsv(self):
 
     def test_create_edge_slots(self):
         """
-            Test we can create slots with descriptions from a TSV file
+        Test we can create slots with descriptions from a TSV file
         """
         ie = CsvDataGeneralizer()
         schema_dict = ie.read_slot_tsv(NEWSLOTS, is_a="edge property")
@@ -51,6 +51,65 @@ def test_create_edge_slots(self):
         with open(NEWSLOTS_OUTSCHEMA, 'w') as stream:
             stream.write(ys)
 
+    def test_infer_range(self):
+        """
+        Tests inference of ranges
+        """
+        cases = [
+            ([1, 2, 3], "integer"),
+            ([1, 2, "x"], "string"),
+            ([1, 2, "-3"], "integer"),
+            (["100", "200", "300"], "integer"),
+            ([], "string"),
+            ([None], "string"),
+            ([1, None], "integer"),
+            ([1, ""], "integer"),
+            (['5.99', '7.95', '7.99', '6.99'], "float"),
+            (['5.999', '7.955', '7.990', '6.990'], "float"),
+            (["2mm", "3m", "4 mm"], "measurement"),
+            (["true", "false"], "boolean"),
+        ]
+        for values, expected in cases:
+            self.assertEqual(infer_range({}, values, {}), expected, f"Failed on {values}")
+
+    def test_metadata_rows(self):
+        """
+        Tests TSVs that include additional metadata
+        """
+        ie = CsvDataGeneralizer(data_dictionary_row_count=1,
+                                enum_threshold=0.5,)
+        rows = [
+            {"id": "identifier",
+             "name": "name of pet",
+             "description": "A description of the pet",
+             "age": "age of pet",
+            "species": "species of pet"},
+            {"id": "1", "name": "Fido", "age": "3", "species": "dog"},
+            {"id": "2", "name": "Rover", "age": "3", "species": "dog"},
+            {"id": "3", "name": "Buster", "age": "2", "species": "dog"},
+            {"id": "4", "name": "MrTickles", "age": "6", "species": "dog"},
+            {"id": "5", "name": "Violet", "age": "4", "species": "cat"},
+            {"id": "6", "name": "MrFurry", "age": "1", "species": "cat"},
+            {"id": "7", "name": "X", "age": "3", "species": "cat"},
+            {"id": "8", "name": "Z", "age": "3", "species": "cat"},
+            {"id": "9", "name": "A", "age": "3", "species": "cat"},
+        ]
+        schema = ie.convert_dicts(rows, "test", "Pet")
+        slots = schema.slots
+        self.assertEqual(slots["name"].description, "name of pet")
+        self.assertEqual(slots["age"].description, "age of pet")
+        self.assertEqual(slots["species"].description, "species of pet")
+        self.assertEqual(slots["id"].description, "identifier")
+        self.assertTrue(slots["id"].identifier)
+        # ensure that the first metadata row was not counted as a data row
+        # (if it is, then the range would be inferred to be string,
+        #  and the description would be an enum value)
+        self.assertEqual(slots["age"].range, "integer")
+        species = list(schema.enums["species_enum"].permissible_values.keys())
+        self.assertCountEqual(species, ["dog", "cat"])
+        write_schema(schema)
+
+
     def _convert(self, base_name: str, cn='Example', index_slot='examples') -> SchemaDefinition:
         ie = CsvDataGeneralizer()
         fn = f'{base_name}.tsv'