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run of Fastq file error #287

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SimonDemontardy opened this issue Jul 12, 2024 · 2 comments
Open

run of Fastq file error #287

SimonDemontardy opened this issue Jul 12, 2024 · 2 comments

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@SimonDemontardy
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Good morning,

Since quite a time im trying to extract data using trust4. However im having the following error :
"Need to use -f to specify the receptor genome sequence. system ////bin/fastq-extractor -t 64 -f //**/resultsTrust4F/trust4-processing/hg38_bcrtcr.fa -o /outputpath/ ..... failed: 256 at path//bin/run-trust4 line 48

thanks for your help.

@mourisl
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mourisl commented Jul 12, 2024

Could you show me the full error message? Thank you.

@SimonDemontardy
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i think i just found the problem when i wrote the mistake, one of the path seems wrong so it cannot access the reference file

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