NAMESPACE

# Generated by roxygen2: do not edit by hand

export(annotateWithCate)
export(barplotFromNamedVector)
export(cateNamesFromThreshold)
export(createMyGRs)
export(createMyGRsUsingSimpleOverlap)
export(plotAllBarPlotForCategoriesFromMyGR)
export(plotAllPheatmapsFor2CategoriesFromMyGR)
export(plotCateComparisonSetAndRef)
export(plotClassicalHistogramForMyGRs)
export(plotPairwiseComparison)
export(writeNarrowPeaksFromMyGRsAndAnnot)
export(writeTablesFromMyGRsAndAnnot)
importFrom(GenomicRanges,distanceToNearest)
importFrom(GenomicRanges,end)
importFrom(GenomicRanges,findOverlaps)
importFrom(GenomicRanges,flank)
importFrom(GenomicRanges,mcols)
importFrom(GenomicRanges,start)
importFrom(RColorBrewer,brewer.pal)
importFrom(grDevices,colorRampPalette)
importFrom(grDevices,rainbow)
importFrom(grDevices,rgb)
importFrom(graphics,barplot)
importFrom(graphics,hist)
importFrom(graphics,legend)
importFrom(graphics,par)
importFrom(graphics,plot)
importFrom(igraph,add_vertices)
importFrom(igraph,components)
importFrom(igraph,graph_from_edgelist)
importFrom(igraph,vcount)
importFrom(pheatmap,pheatmap)
importFrom(reshape,cast)
importFrom(stats,aggregate)
importFrom(stats,cor.test)
importFrom(stats,median)
importFrom(stats,na.omit)
importFrom(stats,quantile)
importFrom(usefulLDfunctions,subsetByNamesOrIndices)
importFrom(usefulLDfunctionsGR,findOverlapAsClusters)
importFrom(usefulLDfunctionsGR,narrowPeakDFFromGR)
importFrom(utils,head)
importFrom(utils,write.table)