4.11.1

[markcmiller86]

What's Changed

• Converted Silo's FrameMaker docs to Markdown and host on RTD (https://silo.readthedocs.io/en/latest/)
• Fix Windows compile errors. by @biagas in Fix Windows compile errors. #217
• Add intial cmake build system (still several items to be completed) by @biagas in Add intial cmake build system #220
• Fix H5Epush_ret semicolon termination compiler issues by @markcmiller86 in Fix some compiler issues #227
• Fix several _GE checks to use correct HDF5 versions by @markcmiller86 in Fix _GE checks for correct HDF5 versions #232
• Switch int to long in score s_mem_descriptor mem header by @markcmiller86 in Fix int type for length in mem header #252
• Add DBFREECAOPT (thanks @cessenat) in backport #244 from to 4.11RC #259
• Fix bug in fortran interface for 2D facelist write by @markcmiller86 in Fix 2D facelist write #257
• Fix off-by-one error in component str copies for DBChangeObject by @markcmiller86 in Fix off-by-one in component str copies for DBChangeObject #282
• include zfp source files only when needed by @markcmiller86 in include only zfp files when needed, re-ran automake #283
• Fix compilation error for DB_OBJ_CASE macro for partial i/o for time series by @markcmiller86 in Fix obj-case-macro for partial i/o for time series #284
• Ensure compatability with 4.11 by @markcmiller86 in Ensure compatability with 4.11 #291
• Make DBInqVarExists work for dirs on PDB driver by @markcmiller86 in Make InqVarExists work for dirs on PDB driver #292
• Add new fields for H5FD_class_t in newer HDF5s by @markcmiller86 in HDF5 add new fields for H5FD_class_t #308 and in Backport support for hdf5 1.13 #314
• Ensure python module closes file when deallocating by @markcmiller86 in Close file when deallocing #315
• Misc compiler and test fixes involving HDF5 by @markcmiller86 in Misc compiler and test fixes #319
• Fix configure's python path check by @markcmiller86 in Fix configure's python path check #321
• Fix leak for file_scope_globals (thanks Dave Bremer) by @markcmiller86 in Patch from Dave Bremer #306
• Rename version.c to dbversion.c by @markcmiller86 in Rename version.c to dbversion.c #330 (see Should #include <really-common-word> work? visit-dav/visit#18757)
• Switch to xz for smaller dist files by @markcmiller86 in Switch to xz for smaller dist files #328
• Fix proper handling of null fortran arrays for multi-block object names by @markcmiller86 in Fix handling of null fortran arrays for multi-block objects #311
• Fix PJ cache for GetComponentType and add more tests for fortran cases by @markcmiller86 in Fix PJ cache for GetComponentType #341
• apply @pkestene gfort-10 patch by @markcmiller86 in apply pkestene gfort-10 patch #346
• Add DBSetCompatabilityMode and tests by @markcmiller86 in Add compatability mode #350

Full Changelog: 4.11...4.11.1

---

This discussion was created from the release 4.11.1.

[markcmiller86]

Release Testing

A make check performs a run through the test suite first on the PDB driver (the default) and then on the HDF5 driver. Some tests are driver specific and are skipped on the other driver's run. If HDF5 library was not compiled with certain compression features, some compression tests are skipped. Likewise, if other features of Silo are disabled (e.g. python module, json, fortran interface, etc.) tests associated with those features will show as skipped.

macOS 12.6.7, HDF5-1.14.0

[scratlantis:~/silo/4.11RC] miller86% gcc --version
Apple clang version 13.1.6 (clang-1316.0.21.2.5)
Target: x86_64-apple-darwin21.6.0
Thread model: posix
InstalledDir: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin
[scratlantis:~/silo/4.11RC] miller86% uname -a
Darwin scratlantis 21.6.0 Darwin Kernel Version 21.6.0: Thu Jun  8 23:57:12 PDT 2023; root:xnu-8020.240.18.701.6~1/RELEASE_X86_64 x86_64
[scratlantis:~/silo/4.11RC] miller86% head config.log
This file contains any messages produced by compilers while
running configure, to aid debugging if configure makes a mistake.

It was created by silo configure 4.11.1, which was
generated by GNU Autoconf 2.69.  Invocation command line was

  $ ./configure CC=gcc CXX=g++ FC=gfortran F77=gfortran CFLAGS=-g -fPIC CXXFLAGS=-g -fPIC --with-hdf5=/Users/miller86/silo/hdf5-1.14.0/build_serial/myinstall/include,/Users/miller86/silo/hdf5-1.14.0/build_serial/myinstall/lib --enable-pythonmodule --enable-json --enable-fpzip --enable-hzip --enable-fortran --prefix=/Users/miller86/silo/4.11RC/myinstall --no-create --no-recursion

/Applications/Xcode.app/Contents/Developer/usr/bin/make  check-local
/bin/sh ./testsuite PYTHON="//opt/local/bin/python" BROWSER="browser" STARGS="" 
## ---------------------------------------------- ##
## silo 4.11.1 test suite: VALGRIND="" STARGS="". ##
## ---------------------------------------------- ##

Non-driver-specific

  1: dbversion                                       ok
  2: namescheme                                      ok
  3: realloc_obj_and_opts                            ok
  4: point                                           ok
  5: extface                                         ok
  6: testall -small                                  ok
  7: TestReadMask                                    ok
  8: array                                           ok
  9: multi_test testread                             ok
 10: multi_test testbadread                          ok
 11: multi_test testflush                            ok
 12: multi_test testflushread                        ok
 13: multi_test earlyclose                           ok
 14: partial_io                                      ok
 15: simple                                          ok
 16: ucd                                             ok
 17: ucdsamp3                                        ok
 18: testall -small -fortran                         ok
 19: obj                                             ok
 20: onehex                                          ok
 21: oneprism                                        ok
 22: onepyramid                                      ok
 23: onetet                                          ok
 24: subhex                                          ok
 25: twohex                                          ok
 26: multispec                                       ok
 27: sami                                            ok
 28: newsami                                         ok
 29: specmix                                         ok
 30: spec                                            ok
 31: group_test                                      ok
 32: listtypes                                       ok
 33: alltypes                                        ok
 34: wave                                            ok
 35: polyzl                                          ok
 36: csg                                             ok
 37: rocket                                          ok
 38: mmadjacency                                     ok
 39: mat3d_3across                                   ok
 40: ucd1d                                           ok
 41: dir                                             ok
 42: quad                                            ok
 43: arbpoly2d                                       ok
 44: readstuff                                       ok
 45: testfs                                          ok
 46: empty                                           ok

pythonmodule

 47: read                                            ok
 48: write                                           ok
 49: error handling                                  ok
 50: write objects                                   ok

JSON (experimental)

 51: json                                            ok

PDB Lite

 52: testpdb                                         ok
 53: pdbtst                                          ok

HDF5 Driver Specific

 54: grab                                            skipped (testsuite.at:279)
 55: onehex with split driver                        skipped (testsuite.at:282)
 56: onehex with custom fapl/fcpl                    skipped (testsuite.at:285)
 57: partial_io with rect3d point query              skipped (testsuite.at:289)
 58: partial_io with ucd3d point query               skipped (testsuite.at:293)
 59: compression gzip                                skipped (testsuite.at:297)
 60: compression szip                                skipped (testsuite.at:302)
 61: compression fpzip                               skipped (testsuite.at:307)
 62: compression lossy3                              skipped (testsuite.at:312)
 63: compression minratio1000                        skipped (testsuite.at:317)
 64: compression zfp                                 skipped (testsuite.at:321)
 65: testhzip                                        skipped (testsuite.at:326)
 66: checksums                                       skipped (testsuite.at:329)
 67: xversion                                        skipped (testsuite.at:332)
 68: largefile                                       skipped (testsuite.at:336)

Fortran

 69: arrayf77                                        ok
 70: arrayf90                                        ok
 71: curvef77                                        ok
 72: matf77                                          ok
 73: pointf77                                        ok
 74: quadf77                                         ok
 75: testallf77                                      ok
 76: ucdf77                                          ok
 77: csgmesh                                         ok
 78: qmeshmat2df77                                   ok

Special

 79: silock                                          ok
 80: force single                                    ok
 81: multi_file                                      ok
 82: multi_file use-ns                               ok
 83: testall -medium                                 ok
 84: testall -large                                  ok

## ------------- ##
## Test results. ##
## ------------- ##

69 tests were successful.
15 tests were skipped.
## ----------------------------------------------------- ##
## silo 4.11.1 test suite: VALGRIND="" STARGS="DB_HDF5". ##
## ----------------------------------------------------- ##

Non-driver-specific

  1: dbversion                                       ok
  2: namescheme                                      ok
  3: realloc_obj_and_opts                            ok
  4: point                                           ok
  5: extface                                         ok
  6: testall -small                                  ok
  7: TestReadMask                                    ok
  8: array                                           ok
  9: multi_test testread                             ok
 10: multi_test testbadread                          ok
 11: multi_test testflush                            ok
 12: multi_test testflushread                        ok
 13: multi_test earlyclose                           ok
 14: partial_io                                      ok
 15: simple                                          ok
 16: ucd                                             ok
 17: ucdsamp3                                        ok
 18: testall -small -fortran                         ok
 19: obj                                             ok
 20: onehex                                          ok
 21: oneprism                                        ok
 22: onepyramid                                      ok
 23: onetet                                          ok
 24: subhex                                          ok
 25: twohex                                          ok
 26: multispec                                       ok
 27: sami                                            ok
 28: newsami                                         ok
 29: specmix                                         ok
 30: spec                                            ok
 31: group_test                                      ok
 32: listtypes                                       ok
 33: alltypes                                        ok
 34: wave                                            ok
 35: polyzl                                          ok
 36: csg                                             ok
 37: rocket                                          ok
 38: mmadjacency                                     ok
 39: mat3d_3across                                   ok
 40: ucd1d                                           ok
 41: dir                                             ok
 42: quad                                            ok
 43: arbpoly2d                                       ok
 44: readstuff                                       ok
 45: testfs                                          ok
 46: empty                                           ok

pythonmodule

 47: read                                            ok
 48: write                                           ok
 49: error handling                                  ok
 50: write objects                                   ok

JSON (experimental)

 51: json                                            ok

PDB Lite

 52: testpdb                                         skipped (testsuite.at:271)
 53: pdbtst                                          skipped (testsuite.at:274)

HDF5 Driver Specific

 54: grab                                            ok
 55: onehex with split driver                        ok
 56: onehex with custom fapl/fcpl                    ok
 57: partial_io with rect3d point query              ok
 58: partial_io with ucd3d point query               ok
 59: compression gzip                                ok
 60: compression szip                                skipped (testsuite.at:302)
 61: compression fpzip                               ok
 62: compression lossy3                              ok
 63: compression minratio1000                        ok
 64: compression zfp                                 ok
 65: testhzip                                        ok
 66: checksums                                       ok
 67: xversion                                        ok
 68: largefile                                       ok

Fortran

 69: arrayf77                                        ok
 70: arrayf90                                        ok
 71: curvef77                                        ok
 72: matf77                                          ok
 73: pointf77                                        ok
 74: quadf77                                         ok
 75: testallf77                                      ok
 76: ucdf77                                          ok
 77: csgmesh                                         ok
 78: qmeshmat2df77                                   ok

Special

 79: silock                                          ok
 80: force single                                    ok
 81: multi_file                                      ok
 82: multi_file use-ns                               ok
 83: testall -medium                                 ok
 84: testall -large                                  ok

## ------------- ##
## Test results. ##
## ------------- ##

81 tests were successful.
3 tests were skipped.

macOS 12.6.7, HDF5-1.8.14

[scratlantis:~/silo/4.11RC/build_hdf5_1.8] miller86% head config.log 
This file contains any messages produced by compilers while
running configure, to aid debugging if configure makes a mistake.

It was created by silo configure 4.11.1, which was
generated by GNU Autoconf 2.69.  Invocation command line was

  $ ../configure CC=gcc CXX=g++ FC=gfortran F77=gfortran CFLAGS=-g -fPIC CXXFLAGS=-g -fPIC --with-hdf5=/Users/miller86/silo/hdf5-1.8.14/build_serial/myinstall/include,/Users/miller86/silo/hdf5-1.8.14/build_serial/myinstall/lib --enable-pythonmodule --enable-install-lite-headers --enable-json --enable-fpzip --enable-hzip --prefix=/Users/miller86/silo/4.11RC/build_hdf5_1.8/myinstall --no-create --no-recursion

/Applications/Xcode.app/Contents/Developer/usr/bin/make  check-local
/bin/sh ../../tests/testsuite PYTHON="//opt/local/bin/python" BROWSER="browser" STARGS="" 
## ---------------------------------------------- ##
## silo 4.11.1 test suite: VALGRIND="" STARGS="". ##
## ---------------------------------------------- ##

Non-driver-specific

  1: dbversion                                       ok
  2: namescheme                                      ok
  3: realloc_obj_and_opts                            ok
  4: point                                           ok
  5: extface                                         ok
  6: testall -small                                  ok
  7: TestReadMask                                    ok
  8: array                                           ok
  9: multi_test testread                             ok
 10: multi_test testbadread                          ok
 11: multi_test testflush                            ok
 12: multi_test testflushread                        ok
 13: multi_test earlyclose                           ok
 14: partial_io                                      ok
 15: simple                                          ok
 16: ucd                                             ok
 17: ucdsamp3                                        ok
 18: testall -small -fortran                         ok
 19: obj                                             ok
 20: onehex                                          ok
 21: oneprism                                        ok
 22: onepyramid                                      ok
 23: onetet                                          ok
 24: subhex                                          ok
 25: twohex                                          ok
 26: multispec                                       ok
 27: sami                                            ok
 28: newsami                                         ok
 29: specmix                                         ok
 30: spec                                            ok
 31: group_test                                      ok
 32: listtypes                                       ok
 33: alltypes                                        ok
 34: wave                                            ok
 35: polyzl                                          ok
 36: csg                                             ok
 37: rocket                                          ok
 38: mmadjacency                                     ok
 39: mat3d_3across                                   ok
 40: ucd1d                                           ok
 41: dir                                             ok
 42: quad                                            ok
 43: arbpoly2d                                       ok
 44: readstuff                                       ok
 45: testfs                                          ok
 46: empty                                           ok

pythonmodule

 47: read                                            ok
 48: write                                           ok
 49: error handling                                  ok
 50: write objects                                   ok

JSON (experimental)

 51: json                                            ok

PDB Lite

 52: testpdb                                         ok
 53: pdbtst                                          ok

HDF5 Driver Specific

 54: grab                                            skipped (testsuite.at:279)
 55: onehex with split driver                        skipped (testsuite.at:282)
 56: onehex with custom fapl/fcpl                    skipped (testsuite.at:285)
 57: partial_io with rect3d point query              skipped (testsuite.at:289)
 58: partial_io with ucd3d point query               skipped (testsuite.at:293)
 59: compression gzip                                skipped (testsuite.at:297)
 60: compression szip                                skipped (testsuite.at:302)
 61: compression fpzip                               skipped (testsuite.at:307)
 62: compression lossy3                              skipped (testsuite.at:312)
 63: compression minratio1000                        skipped (testsuite.at:317)
 64: compression zfp                                 skipped (testsuite.at:321)
 65: testhzip                                        skipped (testsuite.at:326)
 66: checksums                                       skipped (testsuite.at:329)
 67: xversion                                        skipped (testsuite.at:332)
 68: largefile                                       skipped (testsuite.at:336)

Fortran

 69: arrayf77                                        ok
 70: arrayf90                                        ok
 71: curvef77                                        ok
 72: matf77                                          ok
 73: pointf77                                        ok
 74: quadf77                                         ok
 75: testallf77                                      ok
 76: ucdf77                                          ok
 77: csgmesh                                         ok
 78: qmeshmat2df77                                   ok

Special

 79: silock                                          ok
 80: force single                                    ok
 81: multi_file                                      ok
 82: multi_file use-ns                               ok
 83: testall -medium                                 ok
 84: testall -large                                  ok

## ------------- ##
## Test results. ##
## ------------- ##

69 tests were successful.
15 tests were skipped.
## ----------------------------------------------------- ##
## silo 4.11.1 test suite: VALGRIND="" STARGS="DB_HDF5". ##
## ----------------------------------------------------- ##

Non-driver-specific

  1: dbversion                                       ok
  2: namescheme                                      ok
  3: realloc_obj_and_opts                            ok
  4: point                                           ok
  5: extface                                         ok
  6: testall -small                                  ok
  7: TestReadMask                                    ok
  8: array                                           ok
  9: multi_test testread                             ok
 10: multi_test testbadread                          ok
 11: multi_test testflush                            ok
 12: multi_test testflushread                        ok
 13: multi_test earlyclose                           ok
 14: partial_io                                      ok
 15: simple                                          ok
 16: ucd                                             ok
 17: ucdsamp3                                        ok
 18: testall -small -fortran                         ok
 19: obj                                             ok
 20: onehex                                          ok
 21: oneprism                                        ok
 22: onepyramid                                      ok
 23: onetet                                          ok
 24: subhex                                          ok
 25: twohex                                          ok
 26: multispec                                       ok
 27: sami                                            ok
 28: newsami                                         ok
 29: specmix                                         ok
 30: spec                                            ok
 31: group_test                                      ok
 32: listtypes                                       ok
 33: alltypes                                        ok
 34: wave                                            ok
 35: polyzl                                          ok
 36: csg                                             ok
 37: rocket                                          ok
 38: mmadjacency                                     ok
 39: mat3d_3across                                   ok
 40: ucd1d                                           ok
 41: dir                                             ok
 42: quad                                            ok
 43: arbpoly2d                                       ok
 44: readstuff                                       ok
 45: testfs                                          ok
 46: empty                                           ok

pythonmodule

 47: read                                            ok
 48: write                                           ok
 49: error handling                                  ok
 50: write objects                                   ok

JSON (experimental)

 51: json                                            ok

PDB Lite

 52: testpdb                                         skipped (testsuite.at:271)
 53: pdbtst                                          skipped (testsuite.at:274)

HDF5 Driver Specific

 54: grab                                            ok
 55: onehex with split driver                        ok
 56: onehex with custom fapl/fcpl                    ok
 57: partial_io with rect3d point query              ok
 58: partial_io with ucd3d point query               ok
 59: compression gzip                                ok
 60: compression szip                                skipped (testsuite.at:302)
 61: compression fpzip                               ok
 62: compression lossy3                              ok
 63: compression minratio1000                        ok
 64: compression zfp                                 ok
 65: testhzip                                        ok
 66: checksums                                       ok
 67: xversion                                        ok
 68: largefile                                       ok

Fortran

 69: arrayf77                                        ok
 70: arrayf90                                        ok
 71: curvef77                                        ok
 72: matf77                                          ok
 73: pointf77                                        ok
 74: quadf77                                         ok
 75: testallf77                                      ok
 76: ucdf77                                          ok
 77: csgmesh                                         ok
 78: qmeshmat2df77                                   ok

Special

 79: silock                                          ok
 80: force single                                    ok
 81: multi_file                                      ok
 82: multi_file use-ns                               ok
 83: testall -medium                                 ok
 84: testall -large                                  ok

## ------------- ##
## Test results. ##
## ------------- ##

81 tests were successful.
3 tests were skipped.

Diffing HDF5-1.14.0 with HDF5-1.8.14 tools

sh-3.2$ for f in multi*.h5; do echo $f; ../tools/browser/browser -e diff $f ~/silo/4.11RC/tests/$f; done
multi_curv2d.h5
INFO: opening `multi_curv2d.h5' as $1
INFO: opening `/Users/miller86/silo/4.11RC/tests/multi_curv2d.h5' as $2
Object                           multi_curv2d.h5                                   /Users/miller86/silo/4.11RC/tests/multi_curv2d.h5
----------------------------------------------------------------------------------------------------------------------------------
_hdf5libinfo                   = "hdf5-1.8.14"                                     "hdf5-1.14.0"
multi_curv3d.h5            
INFO: opening `multi_curv3d.h5' as $1
INFO: opening `/Users/miller86/silo/4.11RC/tests/multi_curv3d.h5' as $2
Object                           multi_curv3d.h5                                   /Users/miller86/silo/4.11RC/tests/multi_curv3d.h5
----------------------------------------------------------------------------------------------------------------------------------
_hdf5libinfo                   = "hdf5-1.8.14"                                     "hdf5-1.14.0"
multi_point2d.h5            
INFO: opening `multi_point2d.h5' as $1
INFO: opening `/Users/miller86/silo/4.11RC/tests/multi_point2d.h5' as $2
Object                           multi_point2d.h5                                  /Users/miller86/silo/4.11RC/tests/multi_point2d.h5
----------------------------------------------------------------------------------------------------------------------------------
_hdf5libinfo                   = "hdf5-1.8.14"                                     "hdf5-1.14.0"
multi_rect2d.h5            
INFO: opening `multi_rect2d.h5' as $1
INFO: opening `/Users/miller86/silo/4.11RC/tests/multi_rect2d.h5' as $2
Object                           multi_rect2d.h5                                   /Users/miller86/silo/4.11RC/tests/multi_rect2d.h5
----------------------------------------------------------------------------------------------------------------------------------
_hdf5libinfo                   = "hdf5-1.8.14"                                     "hdf5-1.14.0"
multi_rect3d.h5             
INFO: opening `multi_rect3d.h5' as $1
INFO: opening `/Users/miller86/silo/4.11RC/tests/multi_rect3d.h5' as $2
Object                           multi_rect3d.h5                                   /Users/miller86/silo/4.11RC/tests/multi_rect3d.h5
----------------------------------------------------------------------------------------------------------------------------------
_hdf5libinfo                   = "hdf5-1.8.14"                                     "hdf5-1.14.0"
multi_ucd3d.h5              
INFO: opening `multi_ucd3d.h5' as $1
INFO: opening `/Users/miller86/silo/4.11RC/tests/multi_ucd3d.h5' as $2
Object                           multi_ucd3d.h5                                    /Users/miller86/silo/4.11RC/tests/multi_ucd3d.h5
----------------------------------------------------------------------------------------------------------------------------------
_hdf5libinfo                   = "hdf5-1.8.14"                                     "hdf5-1.14.0"

BlueOS-3 PPC64, HDF5-1.14.0

This was an odd-ball configuration with compression and json features disabled but test harness skipping logic wasn't quite right and those tests show FAILED when they should have skipped.

make[2]: Entering directory '/g/g11/miller86/silo/4.11RC/build_hdf5-1.14.0/tests'
/bin/sh ../../tests/testsuite PYTHON="" BROWSER="browser" STARGS="" 
## ---------------------------------------------- ##
## silo 4.11.1 test suite: VALGRIND="" STARGS="". ##
## ---------------------------------------------- ##

Non-driver-specific

  1: dbversion                                       ok
  2: namescheme                                      ok
  3: realloc_obj_and_opts                            ok
  4: point                                           ok
  5: extface                                         ok
  6: testall -small                                  ok
  7: TestReadMask                                    ok
  8: array                                           ok
  9: multi_test testread                             ok
 10: multi_test testbadread                          ok
 11: multi_test testflush                            ok
 12: multi_test testflushread                        ok
 13: multi_test earlyclose                           ok
 14: partial_io                                      ok
 15: simple                                          ok
 16: ucd                                             ok
 17: ucdsamp3                                        ok
 18: testall -small -fortran                         ok
 19: obj                                             ok
 20: onehex                                          ok
 21: oneprism                                        ok
 22: onepyramid                                      ok
 23: onetet                                          ok
 24: subhex                                          ok
 25: twohex                                          ok
 26: multispec                                       ok
 27: sami                                            ok
 28: newsami                                         ok
 29: specmix                                         ok
 30: spec                                            ok
 31: group_test                                      ok
 32: listtypes                                       ok
 33: alltypes                                        ok
 34: wave                                            ok
 35: polyzl                                          ok
 36: csg                                             ok
 37: rocket                                          skipped (testsuite.at:199)
 38: mmadjacency                                     ok
 39: mat3d_3across                                   ok
 40: ucd1d                                           ok
 41: dir                                             ok
 42: quad                                            ok
 43: arbpoly2d                                       ok
 44: readstuff                                       ok
 45: testfs                                          ok
 46: empty                                           ok

pythonmodule

 47: read                                            skipped (testsuite.at:234)
 48: write                                           skipped (testsuite.at:249)
 49: error handling                                  skipped (testsuite.at:254)
 50: write objects                                   skipped (testsuite.at:258)

JSON (experimental)

 51: json                                            FAILED (testsuite.at:266)

PDB Lite

 52: testpdb                                         ok
 53: pdbtst                                          ok

HDF5 Driver Specific

 54: grab                                            skipped (testsuite.at:279)
 55: onehex with split driver                        skipped (testsuite.at:282)
 56: onehex with custom fapl/fcpl                    skipped (testsuite.at:285)
 57: partial_io with rect3d point query              skipped (testsuite.at:289)
 58: partial_io with ucd3d point query               skipped (testsuite.at:293)
 59: compression gzip                                skipped (testsuite.at:297)
 60: compression szip                                skipped (testsuite.at:302)
 61: compression fpzip                               skipped (testsuite.at:307)
 62: compression lossy3                              skipped (testsuite.at:312)
 63: compression minratio1000                        skipped (testsuite.at:317)
 64: compression zfp                                 skipped (testsuite.at:321)
 65: testhzip                                        skipped (testsuite.at:326)
 66: checksums                                       skipped (testsuite.at:329)
 67: xversion                                        skipped (testsuite.at:332)
 68: largefile                                       skipped (testsuite.at:336)

Fortran

 69: arrayf77                                        skipped (testsuite.at:346)
 70: arrayf90                                        skipped (testsuite.at:350)
 71: curvef77                                        skipped (testsuite.at:354)
 72: matf77                                          skipped (testsuite.at:358)
 73: pointf77                                        skipped (testsuite.at:362)
 74: quadf77                                         skipped (testsuite.at:366)
 75: testallf77                                      skipped (testsuite.at:370)
 76: ucdf77                                          skipped (testsuite.at:374)
 77: csgmesh                                         skipped (testsuite.at:378)
 78: qmeshmat2df77                                   skipped (testsuite.at:382)

Special

 79: silock                                          ok
 80: force single                                    ok
 81: multi_file                                      ok
 82: multi_file use-ns                               ok
 83: testall -medium                                 ok
 84: testall -large                                 Warning: No xauth data; using fake authentication data for X11 forwarding.
 ok

## ------------- ##
## Test results. ##
## ------------- ##

ERROR: 54 tests were run,
1 failed unexpectedly.
30 tests were skipped.
## -------------------------- ##
## testsuite.log was created. ##
## -------------------------- ##

## ----------------------------------------------------- ##
## silo 4.11.1 test suite: VALGRIND="" STARGS="DB_HDF5". ##
## ----------------------------------------------------- ##

Non-driver-specific

  1: dbversion                                       ok
  2: namescheme                                      ok
  3: realloc_obj_and_opts                            ok
  4: point                                           ok
  5: extface                                         ok
  6: testall -small                                  ok
  7: TestReadMask                                    ok
  8: array                                           ok
  9: multi_test testread                             ok
 10: multi_test testbadread                          ok
 11: multi_test testflush                            ok
 12: multi_test testflushread                        ok
 13: multi_test earlyclose                           ok
 14: partial_io                                      ok
 15: simple                                          ok
 16: ucd                                             ok
 17: ucdsamp3                                        ok
 18: testall -small -fortran                         ok
 19: obj                                             ok
 20: onehex                                          ok
 21: oneprism                                        ok
 22: onepyramid                                      ok
 23: onetet                                          ok
 24: subhex                                          ok
 25: twohex                                          ok
 26: multispec                                       ok
 27: sami                                            ok
 28: newsami                                         ok
 29: specmix                                         ok
 30: spec                                            ok
 31: group_test                                      ok
 32: listtypes                                       ok
 33: alltypes                                        ok
 34: wave                                            ok
 35: polyzl                                          ok
 36: csg                                             ok
 37: rocket                                          skipped (testsuite.at:199)
 38: mmadjacency                                     ok
 39: mat3d_3across                                   ok
 40: ucd1d                                           ok
 41: dir                                             ok
 42: quad                                            ok
 43: arbpoly2d                                       ok
 44: readstuff                                       ok
 45: testfs                                          ok
 46: empty                                           ok

pythonmodule

 47: read                                            skipped (testsuite.at:234)
 48: write                                           skipped (testsuite.at:249)
 49: error handling                                  skipped (testsuite.at:254)
 50: write objects                                   skipped (testsuite.at:258)

JSON (experimental)

 51: json                                            FAILED (testsuite.at:266)

PDB Lite

 52: testpdb                                         skipped (testsuite.at:271)
 53: pdbtst                                          skipped (testsuite.at:274)

HDF5 Driver Specific

 54: grab                                            ok
 55: onehex with split driver                        ok
 56: onehex with custom fapl/fcpl                    ok
 57: partial_io with rect3d point query              ok
 58: partial_io with ucd3d point query               ok
 59: compression gzip                                ok
 60: compression szip                                skipped (testsuite.at:302)
 61: compression fpzip                               skipped (testsuite.at:307)
 62: compression lossy3                              skipped (testsuite.at:312)
 63: compression minratio1000                        skipped (testsuite.at:317)
 64: compression zfp                                 ok
 65: testhzip                                        FAILED (testsuite.at:326)
 66: checksums                                       ok
 67: xversion                                        ok
 68: largefile                                       ok

Fortran

 69: arrayf77                                        skipped (testsuite.at:346)
 70: arrayf90                                        skipped (testsuite.at:350)
 71: curvef77                                        skipped (testsuite.at:354)
 72: matf77                                          skipped (testsuite.at:358)
 73: pointf77                                        skipped (testsuite.at:362)
 74: quadf77                                         skipped (testsuite.at:366)
 75: testallf77                                      skipped (testsuite.at:370)
 76: ucdf77                                          skipped (testsuite.at:374)
 77: csgmesh                                         skipped (testsuite.at:378)
 78: qmeshmat2df77                                   skipped (testsuite.at:382)

Special

 79: silock                                          ok
 80: force single                                    ok
 81: multi_file                                      ok
 82: multi_file use-ns                               ok
 83: testall -medium                                 ok
 84: testall -large                                  ok

## ------------- ##
## Test results. ##
## ------------- ##

ERROR: 63 tests were run,
2 failed unexpectedly.
21 tests were skipped.

Toss4, icc-classic-2021.6, HDF5-1.14.0

  $ ./configure FCLD=ifort CC=icc CXX=icpc --with-hdf5=/usr/tce/packages/hdf5/hdf5-1.14.0-intel-classic-2021.6.0/include,/usr/tce/packages/hdf5/hdf5-1.14.0-intel-classic-2021.6.0/lib --prefix=/g/g11/miller86/silo/4.11RC/myinstall

make[1]: Entering directory '/g/g11/miller86/silo/4.11RC/tests'
/bin/sh ./testsuite PYTHON="" BROWSER="browser" STARGS="" 
## ---------------------------------------------- ##
## silo 4.11.1 test suite: VALGRIND="" STARGS="". ##
## ---------------------------------------------- ##

Non-driver-specific

  1: dbversion                                       ok
  2: namescheme                                      ok
  3: realloc_obj_and_opts                            ok
  4: point                                           ok
  5: extface                                         ok
  6: testall -small                                  ok
  7: TestReadMask                                    ok
  8: array                                           ok
  9: multi_test testread                             ok
 10: multi_test testbadread                          ok
 11: multi_test testflush                            ok
 12: multi_test testflushread                        ok
 13: multi_test earlyclose                           ok
 14: partial_io                                      ok
 15: simple                                          ok
 16: ucd                                             ok
 17: ucdsamp3                                        ok
 18: testall -small -fortran                         ok
 19: obj                                             ok
 20: onehex                                          ok
 21: oneprism                                        ok
 22: onepyramid                                      ok
 23: onetet                                          ok
 24: subhex                                          ok
 25: twohex                                          ok
 26: multispec                                       ok
 27: sami                                            ok
 28: newsami                                         ok
 29: specmix                                         ok
 30: spec                                            ok
 31: group_test                                      ok
 32: listtypes                                       ok
 33: alltypes                                        ok
 34: wave                                            ok
 35: polyzl                                          ok
 36: csg                                             ok
 37: rocket                                          skipped (testsuite.at:199)
 38: mmadjacency                                     ok
 39: mat3d_3across                                   ok
 40: ucd1d                                           ok
 41: dir                                             ok
 42: quad                                            ok
 43: arbpoly2d                                       ok
 44: readstuff                                       ok
 45: testfs                                          ok
 46: empty                                           ok

pythonmodule

 47: read                                            skipped (testsuite.at:234)
 48: write                                           skipped (testsuite.at:249)
 49: error handling                                  skipped (testsuite.at:254)
 50: write objects                                   skipped (testsuite.at:258)

JSON (experimental)

 51: json                                            skipped (testsuite.at:264)

PDB Lite

 52: testpdb                                         ok
 53: pdbtst                                          ok

HDF5 Driver Specific

 54: grab                                            skipped (testsuite.at:279)
 55: onehex with split driver                        skipped (testsuite.at:282)
 56: onehex with custom fapl/fcpl                    skipped (testsuite.at:285)
 57: partial_io with rect3d point query              skipped (testsuite.at:289)
 58: partial_io with ucd3d point query               skipped (testsuite.at:293)
 59: compression gzip                                skipped (testsuite.at:297)
 60: compression szip                                skipped (testsuite.at:302)
 61: compression fpzip                               skipped (testsuite.at:307)
 62: compression lossy3                              skipped (testsuite.at:312)
 63: compression minratio1000                        skipped (testsuite.at:317)
 64: compression zfp                                 skipped (testsuite.at:321)
 65: testhzip                                        skipped (testsuite.at:326)
 66: checksums                                       skipped (testsuite.at:329)
 67: xversion                                        skipped (testsuite.at:332)
 68: largefile                                       skipped (testsuite.at:336)

Fortran

 69: arrayf77                                        ok
 70: arrayf90                                        ok
 71: curvef77                                        ok
 72: matf77                                          ok
 73: pointf77                                        ok
 74: quadf77                                         ok
 75: testallf77                                      ok
 76: ucdf77                                          ok
 77: csgmesh                                         ok
 78: qmeshmat2df77                                   ok

Special

 79: silock                                          ok
 80: force single                                    ok
 81: multi_file                                      ok
 82: multi_file use-ns                               ok
 83: testall -medium                                 ok
 84: testall -large                                  ok

## ------------- ##
## Test results. ##
## ------------- ##

63 tests were successful.
21 tests were skipped.
## ----------------------------------------------------- ##
## silo 4.11.1 test suite: VALGRIND="" STARGS="DB_HDF5". ##
## ----------------------------------------------------- ##

Non-driver-specific

  1: dbversion                                       ok
  2: namescheme                                      ok
  3: realloc_obj_and_opts                            ok
  4: point                                           ok
  5: extface                                         ok
  6: testall -small                                  ok
  7: TestReadMask                                    ok
  8: array                                           ok
  9: multi_test testread                             ok
 10: multi_test testbadread                          ok
 11: multi_test testflush                            ok
 12: multi_test testflushread                        ok
 13: multi_test earlyclose                           ok
 14: partial_io                                      ok
 15: simple                                          ok
 16: ucd                                             ok
 17: ucdsamp3                                        ok
 18: testall -small -fortran                         ok
 19: obj                                             ok
 20: onehex                                          ok
 21: oneprism                                        ok
 22: onepyramid                                      ok
 23: onetet                                          ok
 24: subhex                                          ok
 25: twohex                                          ok
 26: multispec                                       ok
 27: sami                                            ok
 28: newsami                                         ok
 29: specmix                                         ok
 30: spec                                            ok
 31: group_test                                      ok
 32: listtypes                                       ok
 33: alltypes                                        ok
 34: wave                                            ok
 35: polyzl                                          ok
 36: csg                                             ok
 37: rocket                                          skipped (testsuite.at:199)
 38: mmadjacency                                     ok
 39: mat3d_3across                                   ok
 40: ucd1d                                           ok
 41: dir                                             ok
 42: quad                                            ok
 43: arbpoly2d                                       ok
 44: readstuff                                       ok
 45: testfs                                          ok
 46: empty                                           ok

pythonmodule

 47: read                                            skipped (testsuite.at:234)
 48: write                                           skipped (testsuite.at:249)
 49: error handling                                  skipped (testsuite.at:254)
 50: write objects                                   skipped (testsuite.at:258)

JSON (experimental)

 51: json                                            skipped (testsuite.at:264)

PDB Lite

 52: testpdb                                         skipped (testsuite.at:271)
 53: pdbtst                                          skipped (testsuite.at:274)

HDF5 Driver Specific

 54: grab                                            ok
 55: onehex with split driver                        ok
 56: onehex with custom fapl/fcpl                    ok
 57: partial_io with rect3d point query              ok
 58: partial_io with ucd3d point query               ok
 59: compression gzip                                ok
 60: compression szip                                skipped (testsuite.at:302)
 61: compression fpzip                               ok
 62: compression lossy3                              ok
 63: compression minratio1000                        ok
 64: compression zfp                                 ok
 65: testhzip                                        ok
 66: checksums                                       ok
 67: xversion                                        ok
 68: largefile                                       ok

Fortran

 69: arrayf77                                        ok
 70: arrayf90                                        ok
 71: curvef77                                        ok
 72: matf77                                          ok
 73: pointf77                                        ok
 74: quadf77                                         ok
 75: testallf77                                      ok
 76: ucdf77                                          ok
 77: csgmesh                                         ok
 78: qmeshmat2df77                                   ok

Special

 79: silock                                          ok
 80: force single                                    ok
 81: multi_file                                      ok
 82: multi_file use-ns                               ok
 83: testall -medium                                 ok
 84: testall -large                                  ok

## ------------- ##
## Test results. ##
## ------------- ##

75 tests were successful.
9 tests were skipped.
make[1]: Leaving directory '/g/g11/miller86/silo/4.11RC/tests'